Sesamum indicum (sesame): 11452389
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Entry
11452389 CDS
T04135
Symbol
rpoB, SIC0250
Name
(RefSeq) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
11452389 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sind03021
]
11452389 (rpoB)
03400 DNA repair and recombination proteins [BR:
sind03400
]
11452389 (rpoB)
Enzymes [BR:
sind01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
11452389 (rpoB)
Transcription machinery [BR:
sind03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
11452389 (rpoB)
DNA repair and recombination proteins [BR:
sind03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
11452389 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-GeneID:
11452389
NCBI-ProteinID:
YP_004935658
UniProt:
G9IB54
LinkDB
All DBs
Position
Pltd:complement(24062..27274)
Genome browser
AA seq
1070 aa
AA seq
DB search
MLGDANEAMSTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDHEIEFQLFVERYQLV
EPLIKERNAVYESLTYSSELYVSAGLIWKTSRDMQEQTILIGNIPLMNSLGTSIVNGIYR
IVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVSRKQKISI
LVLSSAMGSNLREILDNVYYPEIFLSFLNDKERKKIGSKENAILEFYQQFACVGGDPVFS
ESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGLKFGM
GTLDDMNHLKNKRIRSVADLLQDQFGLSLVRLENVVRGTICGAIRHKLIPTPQNLVNSTP
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGR
ICPIDTSEGINVGLIGSLAIHARMGHWGSLESPFYEISERSTGLRLLYLSPGRDEYYMLA
AGNSLALNQDIQEEQVVPARYRQEFLTIAWERVHLRSIFPFQYFSIGASLIPFIEHNDAN
RALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDSGALALAERGGKIVYIDTDKILFSGN
GDTLSIPLVMYQRSNKNTCMHQKPRVQRGKCIKKGQILADGAATVGGELALGKNVLVAYM
PWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERITKEIPHLEAHLLRNL
DKNGIVMLGSWVETGDILVGKLTPQMVKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG
GRGRVIDVRWIQKRGGSSYNPETIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMP
YLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLV
FSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKIHG
RSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVL
GTTIVGGTIPNPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEA
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgctcggggatgcaaatgaggcaatgtctacaatacctggatttaatcagatccaattt
gaaggattttgtaggttcattgatcagggtttgacagaagaactttataagtttccaaaa
attgaagatacagatcatgaaatcgaatttcaattatttgtggaaagatatcaattggta
gaaccgttgataaaggaaagaaatgctgtgtatgaatcactcacatattcttctgaatta
tatgtatccgcgggattaatttggaaaaccagtagagatatgcaagaacaaactattttg
attggaaacattcctctaatgaattccctaggaacttctatagtaaatggaatatataga
attgtgatcaatcaaatactgcaaagccccggtatttattatcggtcagaattggaccat
aacggaatttcggtctataccggcaccataatatcagattggggaggaagatcagaatta
gagattgatagaaaagcaaggatatgggctcgcgtgagtaggaaacaaaaaatctctatt
ctagttctatcatcagctatgggttcgaatctaagagaaattctagacaatgtttattat
cctgaaatttttttgtcttttctgaatgataaggagagaaaaaaaattggatcaaaagaa
aatgccattttggagttttatcaacaatttgcttgcgtaggtggggatccggtattttct
gaatccttatgtaaggaattacaaaagaagttctttcaacaaagatgtgaattaggaagg
attggtcgacgaaatatgaaccgaagactgaaccttgatataccccagaacaatacattt
ttgttaccacgagacatattggcggctgctgatcatttgattggactaaaatttggaatg
ggtacacttgacgatatgaatcatttgaaaaataagcgcattcgttctgtagcggatctt
ttacaagatcaattcggattgtctctggttcgtttagaaaatgtggttcgaggaactata
tgtggagcaattcggcataaattgataccgactcctcagaatttggtaaattcaactcca
ttaacaaccacttatgaatctttttttggtttacaccccttatctcaagttttagatcga
actaatccattgacacaaatagttcatgggagaaaattgagttatttaggtcctggagga
ctaacagggcgaactgctagttttcggatccgagatatccatcctagtcactatggtcgt
atttgcccaattgacacatctgagggaatcaatgttggacttattggatccttagcaatt
catgcgaggatgggtcattggggatctctagaaagcccgttttatgaaatttcggagaga
tcaacggggttacgactgctttatttatcaccaggtagagatgaatactatatgttagcg
gcaggaaattctttggcgttgaatcaggatattcaggaagaacaggttgttccagctcga
taccgtcaagaattcctgactattgcatgggaacgggttcatcttcgaagtatttttccc
ttccaatatttttctattggagcttccctcattccttttattgaacataatgatgcgaat
agggctttaatgagttctaatatgcaacgtcaggcagttccgctttctcggtccgagaaa
tgcattgttggaactgggttggaacgacaggcggctctagattcaggggctcttgctcta
gccgaacgtgggggaaagatcgtttatatagatactgacaagatccttttctcagggaat
ggagatactctaagcattccattagttatgtatcaacgttccaacaaaaatacttgtatg
catcaaaaaccccgggttcagcggggtaaatgcattaaaaagggacaaattttagcagat
ggtgctgctacggttggtggcgaacttgctttggggaaaaacgtattagtagcttatatg
ccatgggaaggttacaattttgaagatgcagtactcattagtgagcgtttggtatatgaa
gatatttatacttcttttcacatacggaaatatgagattcagacccatgtgacaagccaa
ggccctgaaaggatcactaaggaaataccacatttagaagcccatttacttcgcaattta
gacaaaaatggaattgtgatgttgggatcttgggtagagacgggtgatattttagtaggt
aaattaacgccccaaatggtgaaagaatcatcgtatgcccccgaagatagattgttacga
gccatacttggcattcaggtatctacttcaaaagaaacttgtttaaaactacctataggt
ggtaggggccgggttattgatgtgaggtggatccagaaaaggggaggttctagttataat
ccagaaacgattcgtgtatatatttcacagaaacgtgaaatcaaagtaggcgataaagta
gctggaagacacggaaataaaggtatcatttccaaaattttgcctagacaagatatgcct
tatctgcaagatggaagacctgttgatatggtcttcaacccattaggggtaccttcacga
atgaatgtaggacagatatttgaatgttcgctcgggttagcaggggatttgctagacaga
cattatcgaatagcgccttttgatgagagatatgaacaagaagcttccagaaaactagtg
ttttctgaattatatgaagccagtaaacaaacagcgaatccgtgggtatttgaacccgag
tatccaggaaaaagcagaatatttgatggaaggacggggaatccttttgaacaacccgtt
ataataggaaagccttatatcttgaaattaattcatcaagttgatgataaaatccatgga
cgttccagtggacattatgcgcttgttacacaacaaccccttaggggaagggcaaaacaa
gggggacaacgagtaggagaaatggaggtttgggctctagaaggatttggtgttgctcat
attttacaagagatgcttacttataaatctgatcatattagagcgcgccaagaagtactt
ggtactacgatcgttggaggaacaatacctaatcctgaggatgctccagaatcgtttcga
ttgctcgttcgagaactacgatctttagctctggaactgaatcatttccttgtatctgag
aaaaacttccagattaataggaaggaagcttaa
DBGET
integrated database retrieval system
