Streptomyces inhibens: KI385_20540
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Entry
KI385_20540 CDS
T08140
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sine
Streptomyces inhibens
Pathway
sine03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sine00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KI385_20540 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sine03021
]
KI385_20540 (rpoB)
03400 DNA repair and recombination proteins [BR:
sine03400
]
KI385_20540 (rpoB)
Enzymes [BR:
sine01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KI385_20540 (rpoB)
Transcription machinery [BR:
sine03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KI385_20540 (rpoB)
DNA repair and recombination proteins [BR:
sine03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KI385_20540 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UKY50973
LinkDB
All DBs
Position
complement(4492887..4496372)
Genome browser
AA seq
1161 aa
AA seq
DB search
MAASRNASTANTNNGDSTAPLRISFAKIKEPLGVPNLLALQTESFDWLLGNAAWKGRVEA
ALESGQEVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKERDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFCINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGGDEPLDAGVLTTDDVIATIKYLVKLHAGETETIGESGRSIVVETDDIDHFG
NRRLRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQTNPLSGLTHKRRLSALGPGGLSRERAGLDVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRVNVFGFIETPYRKVVDGQVTEEVDYLTADEEDRFLIAQANAKLSDDMRF
AEQRVLVRRRGGEVDLVPADEVDFMDVSPRQMVSAATAMIPFLEHDDANRALMGSNMMRQ
AVPLIKAESPLVGTGMEYRCAVDAGDVIKAEKDGVVQEVSADYITVANDDGTYTTYRVAK
FTRSNQGTSFNQKVVVDEGARVIEGQVLADGPSTDEGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLSDLDERGIIRIGA
EVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASQGWKVEGVEEEWKKRLHAIGADEVAAGSNVATP
VFDGAREDEISGLFESTIPNRDGERMVKGSGKARLFDGRSGEPFPDPISIGYMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcaacgcctcgactgccaatacgaacaacggcgacagcaccgccccg
ctgcgcatctcttttgcgaagatcaaggagcccctcggggttccgaacctccttgcgctg
cagaccgaaagcttcgactggctgctcggcaatgccgcatggaagggtcgcgtcgaggct
gcgctggagagtgggcaggaagtccccaccaagtccggtctcgaagagatcttcgaagag
atctccccgatcgaagacttctccgggtcgatgtcgctgacgttccgcgaccaccgcttc
gagcccccgaagaactccatcgacgagtgcaaggagcgcgacttcacgtacgcggctccg
ctcttcgtcaccgccgagttcaccaacaacgagaccggcgagatcaagtcccagacggtc
ttcatgggcgacttcccgctcatgaccaacaagggcaccttctgcatcaacggcaccgag
cgtgtcgtcgtctcgcagctggtccgctcgccgggcgtctacttcgacagctccatcgac
aagacgtccgacaaggacatcttctccgccaagatcatcccgtcccggggtgcctggctg
gagatggagatcgacaagcgcgacatggtcggtgtgcgcatcgaccgtaagcgcaagcag
tccgtgaccgtcctgctcaaggctctcggttggaccaccgagcagatcctcgaggagttc
ggcgagtacgagtcgatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcactgctcgacatctaccgcaagctgcgtccgggcgagccgccgacccgcgaggccgcg
cagacgctgctcgagaacctctacttcaacccgaagcgctacgacctcgcgaaggtcggc
cgctacaaggtcaacaagaagctcggtggcgacgagccgctcgacgccggtgtgctgacc
accgacgacgtcatcgcgacgatcaagtacctggtcaagctgcacgcgggcgagaccgag
acgatcggcgagtccggccggtcgatcgtcgtcgagaccgacgacatcgaccacttcggc
aaccgtcgtctgcgcaacgtcggcgagctcatccagaaccaggtccgtacgggtctggct
cgtatggagcgcgtcgtgcgtgagcgcatgaccacccaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcccagttcatggaccagaccaacccgctgtcgggtctgacccacaagcgtcgt
ctgtcggcgctgggcccgggtggtctctcccgtgagcgggccggcctggacgtccgtgac
gtgcacccctctcactacggccgtatgtgcccgattgagacccctgaaggtcccaacatc
ggtctgatcggttcgctggcctcctacggtcgcgtcaacgtcttcggcttcatcgagacg
ccgtaccgcaaggtcgtcgacggccaggtcaccgaggaggtggactacctcaccgctgat
gaggaggaccgcttcctgatcgcccaggccaacgcgaagctctccgacgacatgcggttc
gccgagcagcgtgtgctggtccgccgtcgtggcggcgaggtcgacctggtccccgccgac
gaggtcgacttcatggacgtctcgccgcgccagatggtgtcggccgcgaccgccatgatc
ccgttcctcgagcacgacgacgccaaccgtgcgctcatgggatcgaacatgatgcgccag
gccgttccgctgatcaaggcggagtccccgctggtcggcaccggcatggagtaccgctgt
gcggtcgacgccggtgacgtcatcaaggcggagaaggacggtgtggtccaggaggtctcc
gcggactacatcaccgtcgccaacgacgacggcacgtacaccacgtaccgcgtcgccaag
ttcacccgctccaaccagggcacctccttcaaccagaaggtcgtcgtggacgagggcgcg
cgggtcatcgagggccaggtcctcgccgacggtccgtccacggacgaaggcgagatggcg
ctcggcaagaacctgctcgtggcgttcatgccgtgggagggtcacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctcggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtcctgtccgacctcgacgagcgcggcatcatccgtatcggcgcc
gaggtcgtcgccggcgacatcctcgtcggcaaggtcacgcccaagggtgagaccgagctg
acccccgaggagcgcctgctccgcgcgatcttcggtgagaaggcgcgcgaggtgcgcgac
acctcgctgaaggtgccgcacggtgagatcggcaaggtcatcggcgtccgcgtcttcgac
cgtgaagagggcgacgagctgcccccgggcgtgaaccagctggtccgcgtctacgtcgct
cagaagcgcaagatcaccgacggtgacaagctcgccggccgtcacggcaacaagggcgtc
atctcgaagatcctgccggtcgaggacatgccgttcctggaggacggcaccccggtcgac
atcatcctcaacccgctgggtgtcccgtcccgaatgaacccgggacaggtgctggagatc
cacctcggctggctcgccagccagggctggaaggtcgagggcgtcgaggaggagtggaag
aagcgtctccacgccatcggcgccgacgaggtcgccgccggttccaacgtcgccaccccg
gtgttcgacggtgcgcgcgaggacgagatctccggtctcttcgagtcgacgatcccgaac
cgcgacggcgagcgcatggtcaagggctccggcaaggcgcggctgttcgacggccgctcc
ggtgagccgttcccggacccgatctcgatcgggtacatgtacatcctcaagctgcaccac
ctggtcgacgacaagctgcacgcgcgttcgaccggtccgtactcgatgatcacccagcag
ccgctgggtggtaaggctcagttcggtggccagcgattcggcgagatggaggtgtgggcg
ctggaggcttacggcgccgcatacgccctccaggagctgctgaccatcaagtccgacgac
gtgaccggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacatccccgagccc
ggcattcccgagtccttcaaggtgctcatcaaggaaatgcagtccctgtgcctcaacgtg
gaggtgctgtcctcggacggcatgtccatcgagatgcgcgacaccgacgaggacgtcttc
cgcgctgcggaggagctcggcatcgacctgtcccggcgcgagccgagcagcgtcgaagag
gtctga
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integrated database retrieval system
