Sinomicrobium kalidii: LS482_04130
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Entry
LS482_04130 CDS
T07760
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sinh
Sinomicrobium kalidii
Pathway
sinh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sinh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LS482_04130 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sinh03021
]
LS482_04130 (rpoB)
03400 DNA repair and recombination proteins [BR:
sinh03400
]
LS482_04130 (rpoB)
Enzymes [BR:
sinh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LS482_04130 (rpoB)
Transcription machinery [BR:
sinh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LS482_04130 (rpoB)
DNA repair and recombination proteins [BR:
sinh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LS482_04130 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Biotin_lipoyl
FF_PRPF40A
efThoc1
AGA2
Motif
Other DBs
NCBI-ProteinID:
UGU17065
LinkDB
All DBs
Position
complement(1055692..1059501)
Genome browser
AA seq
1269 aa
AA seq
DB search
MFTNQTERISFASAKNTPDYPDFLDIQIQSFQDFFQLETKSEERGREGLYNTFMENFPIT
DTRNQFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKTGLKKVLGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIVLDRDTVLEKDHIEQIIDADVKTILLHKEDSQ
TADYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRMNKKLGLNIDMEKQILTKEDIITIIKYLIELISAKAEVDDIDHLSNRRVRTVGEQL
SAQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVFAK
VNNMGFIETPYRKVENGKVDVSEFRYLSAEEEEEKLIAQANIPLDEEGTILKDKVIAREE
GDFPVVDPAQVHYTDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPILKPDSPI
VGTGLERRVASDSRVLINAEGNGAVEYVDANKITIKYDRTEEDRLVSFDDDFKTYELIKF
RKTNQGTSINLKPIVKKGDRVVKGQVLCEGYATQQGELALGRNMQVAFMPWKGYNFEDAI
VISEKVVREDIFTSIHIDEYSLEVRDTKLGAEELTNDIPNVSEEATKELDERGMIRIGAE
VKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLSGVVIDKKLFSR
ALKDKRKRAKDKEDIAKLELEYNTKFEDLKSVLVEKLFTLVNGKTSQGVLNDLGEEVLPK
GKKYTLKMLNGVDDFAHLVSGTWTTDDHTNALIADLLHNYKIKLNDLQGALRRDKFTISV
GDELPAGIMKLAKIYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVL
NPLGVPSRMNIGQIYETVLGWAGKKLGKKFATPIFDGASLEEINELTDKAGVPRFGHTHL
YDGGTGERFDQPATVGVIYMIKLGHMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGE
MEVWALEAYGASSTLREILTVKSDDVIGRAKTYESIVKGEAMPEPGLPESFNVLMHELKG
LGLDIRLEE
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgttcacaaatcagactgaaagaataagtttcgcctcggccaagaacaccccggactat
ccggatttcttggacattcagatccaatcgttccaggatttcttccagctggaaaccaag
tctgaggaaagaggacgtgaagggctgtacaacaccttcatggaaaacttcccgattact
gatacacgcaatcagtttgtattagaatttttagattattttgtggaccctcccaggtat
agcattcaggaatgtattgaaagagggttaacgtatagtgttcctttgaaagccagattg
aaactgtattgtaccgatccggaacacgaggactttgagaccatagtacaggacgtttac
ctgggcaccattccttacatgacccccagcggtacctttgtgattaatggcgcggaaagg
gtagtggtttcccagttgcaccgttctccgggagtattctttggacaatctttccacgct
aacggaaccaagctgtattctgccagggtaataccgttcaagggttcctggatagaattt
gccacagacattaacagtgtgatgtatgcgtacatcgacagaaagaaaaagttaccggta
actactttattccgggccattggctttgaaagggataaggatattctggaaatatttgac
ctggccgaagaagtaaaagtatctaaaaccggactcaaaaaagtactgggaagaaaactc
gccgcgagagtgctgaatacatggcacgaggattttgtggacgaggataccggcgaggtg
gtttcaattgaacgtaacgagatcgttctcgacagggataccgtacttgaaaaagatcat
atagaacagattatcgatgcagatgtaaaaaccattctcctgcacaaggaagacagccag
actgcagactatgcgataatccacaatacactgcaaaaagaccctaccaactctgaaaag
gaagcggtagaacacatatacagacagctgcgtaatgcggaaccgcccgatgaggaaacc
gcccgtggcatcatagacaaactgttcttctccgatcagcgatataacctcggtgaagtg
ggaaggtacaggatgaacaagaagctgggtctcaatatcgatatggagaaacagatcctc
accaaggaagatatcatcactatcatcaaatatctgatagagctgataagcgccaaggcc
gaggtggacgatatagaccacttgtccaacagaagggtaagaaccgttggagaacaactg
tctgcacagtttggcgtaggtctggcccgtatggcaaggacgatcagggagcggatgaac
gtaagggataacgaagtgtttacaccgatcgatcttatcaatgcaaagaccctgtcttcc
gtgatcaactcctttttcggtaccaaccagttgtcgcagttcatggaccagaccaacccg
ttggccgaaattacacataaaagacgtttgtcggcactcgggccgggcggactttcaagg
gaaagagccggattcgaggtgcgtgacgtacactatacacattacggacgactttgtccc
atcgaaacacctgaagggccgaacattggtctgatctcttccctgagcgttttcgccaag
gtgaacaatatgggattcatcgaaacgccctacagaaaagtggagaacggcaaagtggac
gtatccgaattccgttacctgagtgcggaagaggaagaagaaaagcttattgcccaggcc
aatattccgttggatgaagaaggaaccatattaaaggataaagttattgcacgtgaggaa
ggcgacttccctgtagtagacccggcacaggttcactataccgacgtggcaccgaaccag
atagcatccatatccgcatcacttatcccgttcctggagcacgacgatgcgaaccgggcc
cttatgggatccaacatgatgcgtcaggccgtgccgatcctgaaacccgattcacctatt
gtaggtaccgggctcgaaaggagagtcgcttccgattccagggtacttatcaatgccgaa
ggcaatggtgcggtagaatatgtagatgccaataagataaccattaaatatgacagaacg
gaagaagaccggttggtaagttttgatgacgattttaagacctatgagctcattaagttc
cggaaaacaaaccaggggacttcaatcaacctgaaacccattgttaaaaaaggggacagg
gtggtcaaaggacaggtattgtgtgaagggtatgctacccagcagggagagcttgccctc
ggtcgaaacatgcaggtggcctttatgccctggaaaggatataactttgaggatgcgatc
gtgatttccgaaaaagtggtaagggaagatatctttacatccatccacatcgatgaatac
tccctggaagtaagggataccaaactcggtgcggaagagcttaccaacgatatcccgaac
gtttcggaagaagctactaaggaactcgacgaacggggaatgataaggatcggtgccgaa
gtaaaacccggcgatatccttatcggtaagattacgcccaagggagaatcagacccgaca
ccggaagaaaaactgctgcgggccatattcggagacaaggcgggagacgtaaaagacgcg
tccctgaaagcctctccctccctgagcggtgtggtgatcgataaaaagctgttctccaga
gccctcaaggataagcgcaagagagcaaaagacaaggaagatatcgcgaaactggagttg
gaatacaacaccaagttcgaagacctgaagagcgtactggtggaaaaactgtttaccctg
gtaaatggaaaaacatcacagggcgtattgaacgacctcggggaggaagtattgccgaaa
ggtaagaaatataccctgaaaatgctcaacggtgtagacgactttgctcaccttgtaagc
ggtacatggacaacagacgatcataccaacgcactgatcgccgacctgctgcacaattac
aagattaagctgaacgaccttcagggagcactgcgaagagataagtttaccatttccgta
ggagatgaactcccggccggtattatgaaactggccaagatctacatcgccaagaaacgt
aaactgaaagtaggtgataaaatggccggtcgtcacgggaacaaaggtatcgtggcgcgt
atcgttcgtcaggaagacatgcctttcctcgaagacggtaccccggtagatatcgtgctt
aacccgttgggtgtaccttcccgtatgaatatcgggcagatatacgaaaccgtactcgga
tgggccggtaaaaaactcggcaagaagtttgcaacacctatttttgacggagcttcgctc
gaagagatcaacgaacttaccgacaaggccggagtgccgagattcggacatacgcacctc
tatgacggaggaacaggtgaacggtttgaccagcctgcgaccgtcggtgtgatctatatg
atcaaactcggtcacatgatcgacgacaaaatgcacgcgcgttctatcgggccatactcc
cttatcacacagcaaccgctcggtggtaaggcacagttcggtggacagcgtttcggagaa
atggaagtatgggcactggaagcctacggagcatccagcacgctgagagaaatactcacg
gtaaagtctgatgacgttatcggaagggccaagacttacgagtctattgtgaaaggagaa
gccatgccggaacccggactgcccgaatcctttaatgtgttgatgcacgaactcaaaggg
ttgggactggacatcagactggaggaataa
DBGET
integrated database retrieval system
