Sulfurovum indicum: IMZ28_04500
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Entry
IMZ28_04500 CDS
T07193
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sinu
Sulfurovum indicum
Pathway
sinu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMZ28_04500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinu03019
]
IMZ28_04500
03009 Ribosome biogenesis [BR:
sinu03009
]
IMZ28_04500
Enzymes [BR:
sinu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IMZ28_04500
Messenger RNA biogenesis [BR:
sinu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMZ28_04500
Ribosome biogenesis [BR:
sinu03009
]
Prokaryotic type
rRNA helicases
IMZ28_04500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QOR62736
UniProt:
A0A7M1S5X3
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All DBs
Position
889434..890816
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AA seq
460 aa
AA seq
DB search
MKFSEFNFHRDIAKGVKIAGFKEPSPIQKMAIPIIEEGKDLVGQAHTGTGKTAAFGLPMM
DKLARGEIERALVITPTRELATQVSDELYHLGRFAGIRTLTVYGGVGYGRQIALIHKGVQ
IVVATPGRLKDLYRKGKIDVFNPEIVVLDEADEMLDMGFLEEIKEIFEYIPQNRQTLLFS
ATMPEPIKELANHILYNPEFISVIGEEDTTNNVIDQRYYVINENQRDEAIVKLLETEDTN
KCIIFCRMKREVDRLTEHLQALGFNTAGLHGDLEQQDREVIIKAYRRGETKVMVATDVAA
RGIDVKDVTHVFNYHIPFDPQSYVHRIGRTGRAGKSGQAITLVTTEEFRELQRIQKEVGA
QMRLATIRGGEGLDAANLEYLADQIRALPVHKDAQKVIDYMGDMDKMLMLEKLVSVLLDQ
EEQTTGSQIGFDQKRVDEMLESFESEQKVTRNNNRRKKRR
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttagtgaatttaattttcaccgtgatattgcaaaaggggtgaagatcgcaggg
tttaaagagccaagccctatacaaaaaatggcaatcccgatcatagaagagggaaaggat
cttgtaggacaggcgcatacaggtacagggaagacagcagcattcggactgccgatgatg
gataaacttgcacgcggcgagatcgagcgtgctttggttattacaccgacacgtgaactt
gctacccaggtttctgatgagctgtatcatttgggccgttttgcagggattcgtacgttg
acagtttacggtggtgtcgggtatggacggcagattgccctgatccacaaaggagtacag
atcgtagttgcaactccgggaagactgaaggacctttacaggaaagggaagatcgatgtc
ttcaatccggagatcgttgtactggatgaagctgatgaaatgctggatatgggcttcctt
gaagagataaaagagatcttcgagtatattcctcaaaaccgtcagacactgctcttttct
gcaacaatgccggagccgatcaaagagctggccaaccacattctctacaatcctgaattc
atttcagtaatcggtgaagaggatacgaccaataatgtgatcgatcagcgttactatgtg
atcaatgagaaccagcgggatgaagcgatcgtgaagctgcttgaaacggaagataccaac
aagtgtatcattttctgtcgtatgaagcgggaagtagacaggctgaccgaacatctccag
gcacttggcttcaatacagccggactgcacggtgatcttgaacagcaggatcgtgaagtg
atcatcaaagcctacagaagaggtgaaacaaaggtgatggtcgcaactgacgttgctgca
cgcggtatcgatgtcaaagatgtcacccatgtctttaactaccacatacctttcgatcca
cagagttatgtacaccgtatagggcgtacagggcgtgcaggaaagagcggccaggcgatc
acactggtgacgacagaagagttccgagagctacagcgtattcagaaagaggtaggtgcc
cagatgcgtcttgctacgatccggggaggagaagggcttgatgcagcaaatcttgaatat
cttgccgatcagatccgtgcactgcctgtccataaggatgcacagaaagttatcgactat
atgggtgatatggacaaaatgctgatgttggagaaacttgtttctgtattgctggatcag
gaagaacagactaccggaagtcagataggatttgatcagaagagagtcgatgagatgctt
gaaagctttgaaagcgaacaaaaagttacccgaaataacaatcgccggaaaaagagaaga
taa
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