Setaria italica (foxtail millet): 101780813
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Entry
101780813 CDS
T02818
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101780813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101780813
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101780813
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101780813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
101780813
NCBI-ProteinID:
XP_004986104
UniProt:
K4A4M9
LinkDB
All DBs
Position
IX:complement(58652264..58672154)
Genome browser
AA seq
2447 aa
AA seq
DB search
MGKGRSFPSVQHSPEGQGPKPLSSPRPLAAGEMIPLTPDVAAELRLLLGDATDSNFDSIR
RELCQLVDCGLDGCILVLQVCLNQRLLTAGEVKNLQSQQNLLSDVFRYCLDKTYFSTCFC
EALKMTALPDGFLETLSNLLELSAAEKVGFGLALLDSEYSEIKLKGQRFSRAQIEELCSN
PNQSVSNDQIHEIAVFLHQSDGLSKHMDTFNNFISLLKVTERPFFAPVANRERDSESTNS
SRHLEMYFGSTDVDFELLLSEIGKEIGMADIVTELGYGCTVDSTHCKEILSVFEPLDDLA
ISKLLGAVVGTHKVLGEAHNTYATFVSAIHNSHTNDSPQLTKWNTDVLVDSINELAPSTN
WVRVMEYLDHDGFNIPDEAAFYLLMSIYARACKDPFPLHAVCGSLWKNAAGQISFLKHAV
SAPTDTFTFAHSSRQLAFPDLAGPSQGNHAWFCLDLLEVLCQLAEVGYTVSVRSMLEYPL
EHCPDLLLVGVSNINTVYNLLQYEVLSCVFPSLLKDTTKGSVVNYLWHTNPYLTLRGFVA
HCDPDYLLRIVDVCHDLKILSAVLDSTPFAFSIKLAAAASRKDYSYLEKWLTEKLSVYRK
GFLEECVNFLKGTMSNTDYILVATTQQPRAIVTNLYWESCPVFIKVLQSHSGHLLSAELL
DELRKLYALYESRNPGSVVRELANSQGGSDDIEVEANTYFHQMFSGQISTDSMIQMLVRF
KESSDKREVSIFNCMISNLFEEYKFFPKYPDKQLKIAAVLFGSLIKHQLVAHVALGIALR
GVLDALRKSVDSKMFMFGTAALEQFMDRVIEWPQYCNHILQISHLRGTHSEMVSAIERAL
AKISSSRNEPNVSNLLSAEQHVSGSSSTEGIEVPESSWLMGTTPAQLGRPIPSFPLQHRQ
HGLLGEKSKVSMSSQNKSILSTQPSLPSSSADSAINPKATVPPSLLASPHQSTSVSTSVH
TTGFLRSRSTSGLPRQPSYTSGFGAALNIETLVAAAEQRETPIETPASEVQDKILFMINN
ISTSNMEAKAKEFNDVLQEQYYPWFAQYMVMKRASIEPNFHDLYLKFFDKVNSKSLNKEI
LKATYENCKVLLRSDLIKSSSEERSLLKNLGSWLGKFTIGRNQALRAKEIDPKSLIVEAY
EKGLMIAVIPFTSKILEPCQSSIAYRPPNPWTMGILSLLAEIYNLPNLKMNLKFDIEVLF
KNLTVDIKDVKPTSLLKDRVREVEGNPDFSNKDVAATQTPVVSEVSSGTISSLTHVELQP
EINITSRAISLPNVLNQYAAPVRVPPTSTVEDENVALMMLEQSSLAQVSPAQTQSPSPSL
FSVNQLMAVIPRDEIRFKINPKLGSLGPQLQYSKIMDLALDKANREIIQPVIQRSVTIAS
RTTKELIVKDYALESDNNTITRSAHLMVGTLAGRLAHVTCKEPLRVALYSHLRNLIQNLM
SGSETIEQLIHMLVNDNLDLGCAIIESVATRQAVEVIDGEIAQSFSQQKKQREATGPAYY
DTYAQGLFDRIPEALRPKPGHLSATQQRVYEDFVHVWHGHGQNVGATSSGPSGAATVSST
LGVPRAYSPNSMSTTSSKFSTVQMGSLTSLTQPTELVSEESVPGIAQFSSVAPAQVAASH
SSVLLGGTFGAASTFSPLASNDPPVGGTTVTTNEISAMVPPTSAADHLGSILPEPLNTGD
ALEKYQQVAQKLEALITNNGKDVEIESVIAAVPDILLRCVSRDEAALAVAQKVFRSLYDN
ASNSAYVTWLLATLVAIRDVCKLVVKELTSWVIYSDEEKKFNIEIIFGLIRSELLNLGEY
NVHLAKLIDGGRNKIATEFAMSLVQTLITQDSVSISELYNVVDALSKLARRPGSPESLQQ
LIETARNNVNTTAGFVVGKDEKVRLSKDKKVLTTRANKEESTANETTMVDPNQVAILFSE
WCQMCDHLSASDVAYSRFVTQLQQDGLLNGDDISERFFRILTELAVTHSLVSEQIVAPGG
SSQQSPQLPQISYFSIDSYAKLVVMMLKYSPLEISSNKGNILSKILSVTVRTIQKEAEEK
KASFNPRPYFRLFINWLYDLTTSDAHHEFQVLSAFANAFHLLQPLRVPAWSFAWLELVSH
RSFMPKLLTCNLQKGWPLFQRLLVDLFKFMEPYLRNAEIPDPVNILYKGTMRVLLVLLHD
FPEFLCDYHFSFCDVIPASCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLAEISIAPRIM
SDVDSALKSKQLKTEVDEYLKRSEGSSFLSDLNKKLLMPQNEAAVAGMHYNVPLINSLVL
YVGIQAVQQLQLNKAIASASVQQINHTPLMDIFQIETATEMFKNLVTSLDTEGRYLLLNA
IANQLRYPNNHTHYFSFIILYLFAEATQEIVQEQITRVLLERLIVNRPHPWGLLVTFIEL
IKNPRYNFWNRPFTHCAPEMERLFESVSRSCAGKAADEGISVQESVL
NT seq
7344 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggcagatccttcccgtctgtacagcactcccccgagggccaaggccccaaa
cccctctcgtcccctcgccccttggccgccggcgagatgatccccctcactcccgatgtc
gccgcggagctccgcctcctgctgggtgacgccaccgactccaacttcgactccattcgg
cgcgagctctgccagttggttgactgcggcctggatggatgcatcttggtgctccaagtc
tgtttgaatcaaaggttgctgactgctggggaggtcaagaacctccagtcgcaacagaat
cttttatctgatgttttcagatattgtttggataaaacatacttcagcacctgtttttgc
gaggcgctcaagatgacagcacttcctgatggttttcttgaaaccttgtcaaatctgctg
gaactctcagctgctgagaaagttggtttcggacttgcgctgttggattctgagtattca
gagataaagctgaaagggcaacggttttcaagggctcaaattgaagagctgtgctcaaac
cctaaccaatctgtatcaaatgaccaaatccatgaaattgctgtgtttctgcatcagtct
gatggcctgtcgaagcatatggatacttttaataactttatatctttactaaaagtcacg
gaaaggccattttttgcacctgtcgcaaatagggaacgtgatagtgaatcaacaaattct
tcaagacatttggagatgtactttggtagcacagatgttgattttgagttgcttctctct
gagattgggaaagaaataggcatggctgacattgtaaccgagttgggttatggatgtact
gttgacagtactcactgtaaggaaatactttctgtttttgagcctcttgatgatcttgca
atatctaagttgcttggggctgttgttggcactcataaggttcttggagaggcccataac
acatatgcaacatttgtatctgctattcataacagccacacgaacgactcacctcagctt
actaaatggaacacagatgttcttgtggattcaatcaatgaactcgccccaagtacaaac
tgggtgcgtgtaatggaatatcttgatcatgatggcttcaatatacctgatgaagcagcc
ttttatctattgatgtctatatatgcgcgtgcctgcaaggatccctttccgcttcatgct
gtttgtgggtcattgtggaagaatgcagcaggccagatatcttttttaaagcatgcggtt
tctgctccaactgatacatttacatttgcacattcttccaggcaactggcatttccagac
ttggcaggtcctagtcaaggtaatcatgcatggttctgccttgaccttctagaggtttta
tgccaacttgctgaagttggatatactgtgtctgtacgatcaatgcttgagtatccactt
gagcattgcccagacctcctacttgttggtgttagcaacatcaataccgtgtataatctc
ctccagtatgaagtactatcctgtgtatttccttctctactgaaggacacaacaaagggc
agtgtggtgaattatctttggcatacaaacccatacctcacacttcgagggtttgtagct
cattgtgatccagattatttgctaagaattgttgatgtgtgccatgacttgaagattcta
tctgctgtccttgattctactccatttgcattttccattaaattggctgctgctgcctcg
aggaaagactacagctatcttgagaaatggctgacagaaaagttatctgtatacaggaaa
ggttttcttgaggaatgtgttaatttcctgaaaggaactatgagcaacacagattatatc
ttagtggctacgacacaacaacctcgagctattgttacaaacttatattgggagtcttgt
cctgtcttcataaaggttcttcagtctcactctgggcatctcttatccgccgaactattg
gatgaactaaggaaactttatgctctatacgaatcgaggaatcctggttctgttgtaaga
gagctcgctaattcacagggaggatcagatgacattgaagtagaggctaatacgtacttt
caccagatgttctctggacagataagcactgattctatgatacaaatgcttgttcgcttc
aaagaatcttcagataagagggaggtatcaattttcaattgtatgatctcgaatcttttt
gaagaatataaattttttcccaagtatcctgataagcagcttaagatagcagctgttctg
tttggatctcttatcaaacatcaacttgtggctcacgttgcacttggaattgctctgcgt
ggtgtccttgatgccttgcgcaaatctgttgattcaaagatgtttatgtttggtacagca
gcactggagcagtttatggaccgcgtcatagagtggccacaatactgtaatcatatattg
cagatttcgcatcttcgtggaacacattctgaaatggtttctgctattgagagagccctt
gccaaaatttcgtcaagtcgaaacgagccaaatgtcagcaatctgctttctgcagagcag
catgtttctggttcatcatccactgaaggcatagaggtgcctgaatcatcatggctgatg
ggtacaaccccagctcaactaggaaggcctattccttcatttcctttgcaacataggcag
catggtcttcttggggagaagtctaaggtttctatgagttcgcagaacaagagcatttta
tccactcaaccttccctcccttcatcatctgctgattcagctattaacccaaaggcaact
gttccaccctctttactagcttcacctcatcagtctaccagtgtgtcaacgagtgtgcat
actactggattcctgcgttctcgaagtacctcaggattgcctaggcaaccttcatacact
agtggatttggagctgctttaaatattgagacacttgttgcagcagcggaacaaagagag
acaccaattgagacacctgcatctgaagttcaggataagattctttttatgatcaacaat
atatctacctcaaacatggaagctaaggcaaaggagtttaatgatgtcctacaggaacag
tattatccttggtttgcacaatacatggtcatgaaaagggcaagcattgaaccgaatttt
catgacctgtatttgaagttctttgataaagtaaactccaaatccttgaataaggaaata
ctgaaagctacatatgagaactgcaaggtcttgttaagatcagaccttatcaaatctagt
tctgaggagcgttccttgctaaaaaacttaggcagctggttgggaaagttcaccattggt
aggaaccaggcactaagggctaaggagattgacccaaaatctcttattgtggaggcttac
gagaaaggattgatgattgcagtcataccattcacttcaaagattcttgaaccttgccag
tcaagtatcgcatatcgtcctccaaatccctggaccatgggaattttaagtctacttgca
gagatttataatctaccaaacctcaaaatgaatctgaaatttgatattgaggttctcttt
aagaaccttactgtggacataaaagatgttaaaccaacttccctgcttaaagatcgagtg
cgcgaagttgagggaaatccggatttttcaaataaagatgttgctgcaactcaaacccct
gtggtttcagaagtctcttcggggaccatctcttcactaactcatgtggaactgcagcct
gagatcaatatcacatcccgtgctataagtcttccaaatgtgctgaatcagtatgctgcc
cctgtacgtgtgcctccaaccagcacagtggaagatgaaaacgttgctctgatgatgctt
gagcaatcttcactggcccaggtttcgccagcacaaacacaatcaccatcaccatctctg
ttctctgttaatcagcttatggcggtgattccacgtgatgagatacgcttcaaaataaat
ccaaagcttggctcgcttggtccacaattgcagtatagcaaaattatggatttagctttg
gataaggctaacagggagataatacagcctgtgattcaaagaagtgtgacaatagcaagc
cgaactacaaaagaacttattgtgaaggattatgcactggagtctgataacaatacgata
actcgttctgcgcatttgatggtcgggactttagctggaaggctggcacatgttacttgc
aaggaacctcttcgtgtcgccctatattcccatcttcgaaatctcattcagaaccttatg
agtggcagtgaaactattgagcaacttattcacatgctagtcaacgacaatctggatctc
ggctgtgccattattgagtctgtggcaacacgtcaggctgttgaagtgattgatggagaa
atagcgcagtcattttctcaacaaaagaaacaaagagaggcaactggtcctgcatattat
gatacttatgctcaagggctatttgatcggatccctgaagcactacgtcctaagcctgga
catctatctgctacccaacagagagtgtatgaggactttgttcacgtgtggcatggccat
ggtcaaaatgttggtgctacaagttctggtccatctggtgctgctactgtgtcaagcact
cttggtgtacctcgagcttacagtccaaattcaatgtcgacaacctccagtaaattttca
actgttcaaatgggttcactaacatctttaactcagccaacagaactggtgtctgaggaa
tcagttcctggtattgcacaattttcgagtgttgctcctgcccaagttgcagcaagccat
tcttctgtcctacttggtggaacctttggtgctgcatccacattttctcctttggcatct
aatgaccctcctgttggtggaacaacagtcacaaccaatgaaataagtgctatggtgcca
cctacatctgctgcagaccacctgggatctattttacctgaacctttgaatacaggggat
gctttggagaaataccaacaggttgcacaaaagttggaagccttgatcaccaataatggc
aaagatgtggaaattgagtctgttattgcggcagttccagatatcttactcaggtgtgtt
agccgggatgaggctgcattagctgttgcgcagaaggttttcagaagtttgtatgataac
gcttcaaatagtgcgtatgtcacatggcttctagcgaccttagttgcgataagagatgtc
tgcaagcttgttgtcaaagagttaacaagctgggtaatctattccgatgaagagaagaag
tttaacattgaaatcatatttggccttattcgttctgagttgctgaatcttggggagtac
aatgttcatttggcaaagctgattgatggtggaagaaataaaattgcaacggaattcgca
atgtcacttgtccaaacattgattactcaagattctgttagcatctcagagctttacaat
gttgttgatgcgctatcgaagcttgcaaggagaccaggttcacctgaatcgttgcaacaa
ttgattgagactgcaaggaataatgtgaacactactgctggttttgttgttgggaaggat
gaaaaggtcagactgtcgaaagataaaaaggttctaacaacccgagcaaacaaagaggaa
agcactgctaatgaaactacaatggttgatccaaaccaggttgcaatcctgttttctgag
tggtgtcagatgtgtgatcatctaagtgctagtgatgtggcatacagtcgttttgtcaca
cagttgcagcaggatggcctgctgaatggagatgatatttctgaacgcttcttccgtatt
ctcacggaacttgctgttacacactctctagtctcagagcagatcgttgccccgggtgga
tcatcccagcaatcaccacagttaccccaaatttcatacttctccattgattcatatgca
aagcttgtcgtcatgatgctcaagtactctccactggaaatatcatcgaataaaggcaat
atactttccaagattctatctgttacagtgaggaccattcagaaagaagctgaagaaaag
aaagcttcatttaatcctcggccatactttcggttgtttataaattggctttatgacctt
actacttcagatgcccaccatgaatttcaggttttgtctgcatttgcaaacgcattccac
ctgctacaacccttgagagttcctgcctggagctttgcttggcttgagttggtgagtcac
aggagcttcatgccaaaactgctgacgtgcaatttgcagaaaggttggccgttattccag
cgtctacttgttgatcttttcaaattcatggagccgtatctaagaaatgctgaaattcca
gatccagtgaacattttatacaaaggaactatgagagttctgcttgtactgctgcatgac
tttcctgaatttctttgtgattatcacttcagtttctgtgatgtgattcctgcaagttgc
attcaaatgcgcaatgtcattcttagtgcttttccacgcaacatgagacttccagatcct
tctactccaaatctaaagattgatttgctggctgaaatttccatagctccacgaatcatg
tcagatgttgatagtgccctcaaatcaaagcagttgaagactgaggtggatgagtatctc
aagagatcggaaggctcttccttcctaagtgacctgaataaaaaattgctgatgcctcag
aatgaagcagctgttgctgggatgcactacaatgtgcctcttatcaattcacttgttctt
tatgttggcatccaagctgtgcaacaactgcaactcaacaaggccattgcatctgcatca
gtacagcagattaaccatacgcctctgatggacattttccagattgaaacagctactgag
atgttcaaaaatcttgtaacaagcttggatacagagggccgctaccttcttttgaatgca
atcgctaaccaactgcgctacccaaataaccatacacactacttctccttcattattctg
tatctatttgccgaggctacccaggaaattgtccaggagcaaataacgagggttcttctg
gaacgtctaatagtgaatcgcccccatccttgggggttacttgttactttcatcgaattg
ataaagaatccgcgttacaacttttggaaccgaccttttacacactgcgcacctgagatg
gagagactgtttgagtcggtgtcaaggtcctgcgccggaaaagctgcagacgaaggaatc
agtgttcaggaatcggtgttgtaa
DBGET
integrated database retrieval system
