Shewanella japonica: SJ2017_2107
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Entry
SJ2017_2107 CDS
T04959
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sja
Shewanella japonica
Pathway
sja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SJ2017_2107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sja03019
]
SJ2017_2107
03400 DNA repair and recombination proteins [BR:
sja03400
]
SJ2017_2107
Enzymes [BR:
sja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SJ2017_2107
Messenger RNA biogenesis [BR:
sja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SJ2017_2107
DNA repair and recombination proteins [BR:
sja03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SJ2017_2107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SWI2_SNF2
AAA_22
DUF2164
Pex14_N
Fer2_2
Motif
Other DBs
NCBI-ProteinID:
ARD22405
LinkDB
All DBs
Position
complement(2522692..2524671)
Genome browser
AA seq
659 aa
AA seq
DB search
MNPMHDSTQVLQAADSEFLHQQLKQQFGFDEFREGQQAVIEHILLGRSSLAIFPTGSGKS
LCYQFSALQLANVTLVISPLLALMKDQIAFLKDKGINAASIDSSQSYDQSQQVMRDVRSG
HTKILMVSVERFKNERFRQFLASIQISLLVVDEAHCISEWGHNFRPDYLKIPVYCQSFAI
PQVLLLTATATAKVKQDIAQHFAISAEQIVQTGFYRPNLDISVKATLEQDKNIELLNAIH
HHQGAGIIYVTLQKTAEDVAQYLRSQGVNCTAYHAGLDAETRHRIQQQFMTGQIPIIVAT
IAFGMGIDKSDIRFVIHYDLPKSIENYSQEIGRAGRDGQLSHCVTLANKDGLNTIENFVY
GDTPEASAIQKLIQHISQETDNGQWEMQESAISTSTNIKLLPLKTLLVQLELANVLKPSF
AYFAEFKYQFVQDKAAVLAQFDESRQAFLTQIFAHTHFKKIWGQLNFDSLYQEFGAERQR
VVAALDYLADKQMILLETKKITQVFEVNSSRLVQADLVAQLSQYFQSNEVKEISRLNQLL
DFFESKTCITARLNHYFDDNRAPQQCGHCSVCRGEVAILPQKSHIALNQLANVEQYLSEF
VSHMSAKGHSSISTAVKAKFLAGMTLPIFARIRVKQLPGFGYCGEYRYQEIIQLIEERR
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctatgcatgactcaactcaagttttacaagccgctgatagtgaatttctacat
cagcaacttaaacaacaatttgggtttgatgaatttcgtgaaggacaacaagctgttatt
gaacatatccttttaggacgttcctctctagctattttccctactggctctggtaaatct
ttgtgttatcaatttagtgccttacagctagctaacgttactttggttatctcaccttta
ttagcattaatgaaagatcaaattgctttcctcaaggataaagggatcaatgccgctagt
attgattcgagtcagagttacgatcaaagtcaacaagtgatgcgagacgttcgaagtggc
cacactaaaattttaatggtatcagttgaacgatttaaaaatgaacgtttcagacaattt
ctcgcttctattcagatttctttattagtggtcgatgaggcgcactgtatttctgagtgg
ggtcataattttcgacctgactacttaaaaataccggtttactgtcaatcctttgctatc
cctcaggtattgttacttaccgctacggcaacggctaaagtcaaacaggatattgctcaa
cactttgctatttcagcggagcaaattgtacagacggggttttatcgacccaatcttgat
atcagtgttaaggcaacattagaacaagataaaaacatcgaattattgaatgccattcac
catcatcaaggtgctgggattatttatgtgacgttgcaaaaaacggcagaagatgtggcg
cagtatctacgctcacagggagttaattgtactgcataccatgcagggttagatgctgaa
acccgccatcggatccaacagcaatttatgacaggtcaaatcccgattattgttgcgaca
attgcatttggtatgggaatagacaaaagcgatattcgatttgtcattcactacgatttg
ccaaagtctattgaaaattacagccaagagattggacgagcagggcgagatggccagctg
tctcattgtgtcactttagctaacaaagatggtttaaataccatagagaattttgtttat
ggcgacacgcctgaagctagtgcaatacaaaagcttatccaacatattagtcaagaaact
gataatggtcagtgggaaatgcaagagtctgctatttcaaccagtaccaatataaaactt
ttaccgttaaagactttgcttgtacaacttgagttggcgaatgtgttaaaacctagcttt
gcttactttgccgaatttaaatatcaatttgttcaagataaagcggctgtcttagcgcag
tttgatgaatcaagacaagcatttttaactcaaatctttgcccatactcactttaaaaaa
atatggggccagttaaattttgactcactttatcaagagtttggtgctgaaagacaacga
gttgttgcagcattagattatttggctgacaagcagatgattcttcttgaaactaaaaaa
attacccaagtttttgaagttaacagcagtaggctagttcaagcagatcttgttgctcaa
ctctctcaatattttcaaagcaatgaagtaaaagaaatctcacgtcttaatcagttgtta
gattttttcgaatcaaagacgtgtatcacagctcgtttgaaccattattttgatgataat
agagcgccgcagcagtgtggacattgtagcgtttgtcgtggtgaagtcgcgattctgccg
caaaaaagtcatatagcgttaaatcagttagccaacgttgagcagtatctatcagaattt
gtgtcccatatgagcgcaaaagggcactcaagtatctctactgctgtaaaagctaaattt
cttgctggtatgacattgccaatattcgctcgtatacgagtgaaacaattaccaggattt
ggctattgtggcgagtatcgttatcaagaaatcattcaacttattgaagagcgtcgttaa
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