KEGG   Shewanella japonica: SJ2017_2107
Entry
SJ2017_2107       CDS       T04959                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
sja  Shewanella japonica
Pathway
sja03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sja00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SJ2017_2107
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sja03019]
    SJ2017_2107
   03400 DNA repair and recombination proteins [BR:sja03400]
    SJ2017_2107
Enzymes [BR:sja01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SJ2017_2107
Messenger RNA biogenesis [BR:sja03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SJ2017_2107
DNA repair and recombination proteins [BR:sja03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SJ2017_2107
SSDB
Motif
Pfam: Helicase_C DEAD RecQ_Zn_bind ResIII SWI2_SNF2 AAA_22 DUF2164 Pex14_N Fer2_2
Other DBs
NCBI-ProteinID: ARD22405
LinkDB
Position
complement(2522692..2524671)
AA seq 659 aa
MNPMHDSTQVLQAADSEFLHQQLKQQFGFDEFREGQQAVIEHILLGRSSLAIFPTGSGKS
LCYQFSALQLANVTLVISPLLALMKDQIAFLKDKGINAASIDSSQSYDQSQQVMRDVRSG
HTKILMVSVERFKNERFRQFLASIQISLLVVDEAHCISEWGHNFRPDYLKIPVYCQSFAI
PQVLLLTATATAKVKQDIAQHFAISAEQIVQTGFYRPNLDISVKATLEQDKNIELLNAIH
HHQGAGIIYVTLQKTAEDVAQYLRSQGVNCTAYHAGLDAETRHRIQQQFMTGQIPIIVAT
IAFGMGIDKSDIRFVIHYDLPKSIENYSQEIGRAGRDGQLSHCVTLANKDGLNTIENFVY
GDTPEASAIQKLIQHISQETDNGQWEMQESAISTSTNIKLLPLKTLLVQLELANVLKPSF
AYFAEFKYQFVQDKAAVLAQFDESRQAFLTQIFAHTHFKKIWGQLNFDSLYQEFGAERQR
VVAALDYLADKQMILLETKKITQVFEVNSSRLVQADLVAQLSQYFQSNEVKEISRLNQLL
DFFESKTCITARLNHYFDDNRAPQQCGHCSVCRGEVAILPQKSHIALNQLANVEQYLSEF
VSHMSAKGHSSISTAVKAKFLAGMTLPIFARIRVKQLPGFGYCGEYRYQEIIQLIEERR
NT seq 1980 nt   +upstreamnt  +downstreamnt
atgaatcctatgcatgactcaactcaagttttacaagccgctgatagtgaatttctacat
cagcaacttaaacaacaatttgggtttgatgaatttcgtgaaggacaacaagctgttatt
gaacatatccttttaggacgttcctctctagctattttccctactggctctggtaaatct
ttgtgttatcaatttagtgccttacagctagctaacgttactttggttatctcaccttta
ttagcattaatgaaagatcaaattgctttcctcaaggataaagggatcaatgccgctagt
attgattcgagtcagagttacgatcaaagtcaacaagtgatgcgagacgttcgaagtggc
cacactaaaattttaatggtatcagttgaacgatttaaaaatgaacgtttcagacaattt
ctcgcttctattcagatttctttattagtggtcgatgaggcgcactgtatttctgagtgg
ggtcataattttcgacctgactacttaaaaataccggtttactgtcaatcctttgctatc
cctcaggtattgttacttaccgctacggcaacggctaaagtcaaacaggatattgctcaa
cactttgctatttcagcggagcaaattgtacagacggggttttatcgacccaatcttgat
atcagtgttaaggcaacattagaacaagataaaaacatcgaattattgaatgccattcac
catcatcaaggtgctgggattatttatgtgacgttgcaaaaaacggcagaagatgtggcg
cagtatctacgctcacagggagttaattgtactgcataccatgcagggttagatgctgaa
acccgccatcggatccaacagcaatttatgacaggtcaaatcccgattattgttgcgaca
attgcatttggtatgggaatagacaaaagcgatattcgatttgtcattcactacgatttg
ccaaagtctattgaaaattacagccaagagattggacgagcagggcgagatggccagctg
tctcattgtgtcactttagctaacaaagatggtttaaataccatagagaattttgtttat
ggcgacacgcctgaagctagtgcaatacaaaagcttatccaacatattagtcaagaaact
gataatggtcagtgggaaatgcaagagtctgctatttcaaccagtaccaatataaaactt
ttaccgttaaagactttgcttgtacaacttgagttggcgaatgtgttaaaacctagcttt
gcttactttgccgaatttaaatatcaatttgttcaagataaagcggctgtcttagcgcag
tttgatgaatcaagacaagcatttttaactcaaatctttgcccatactcactttaaaaaa
atatggggccagttaaattttgactcactttatcaagagtttggtgctgaaagacaacga
gttgttgcagcattagattatttggctgacaagcagatgattcttcttgaaactaaaaaa
attacccaagtttttgaagttaacagcagtaggctagttcaagcagatcttgttgctcaa
ctctctcaatattttcaaagcaatgaagtaaaagaaatctcacgtcttaatcagttgtta
gattttttcgaatcaaagacgtgtatcacagctcgtttgaaccattattttgatgataat
agagcgccgcagcagtgtggacattgtagcgtttgtcgtggtgaagtcgcgattctgccg
caaaaaagtcatatagcgttaaatcagttagccaacgttgagcagtatctatcagaattt
gtgtcccatatgagcgcaaaagggcactcaagtatctctactgctgtaaaagctaaattt
cttgctggtatgacattgccaatattcgctcgtatacgagtgaaacaattaccaggattt
ggctattgtggcgagtatcgttatcaagaaatcattcaacttattgaagagcgtcgttaa

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