Shewanella japonica: SJ2017_3525
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Entry
SJ2017_3525 CDS
T04959
Name
(GenBank) hypothetical protein
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sja
Shewanella japonica
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sja03016
]
SJ2017_3525
Enzymes [BR:
sja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SJ2017_3525
Transfer RNA biogenesis [BR:
sja03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SJ2017_3525
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
T-box
Ribosomal_S21
PHM7_cyt
Motif
Other DBs
NCBI-ProteinID:
ARD23774
LinkDB
All DBs
Position
4178953..4179504
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AA seq
183 aa
AA seq
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MSKSVNKRTFVGFSVGDSIANELKAQQTFIKPLVAKKAKTVAKENFHITAAFLGNTSLAD
RVALGRLIEVETFHAFTVSMPHIAHWPQAKLICAEGMAVDKLSYIANQLQNMAKELGLMQ
SQHDYRPHVSLFRHCTLPSEQTSFPFLLKAPITVTATQLTLFESLNLPGGVKYLPIQHWP
LTP
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagtgttaacaaacgcacttttgtcggtttttcggttggtgattcaatcgcc
aatgagttaaaggcacagcaaaccttcataaagccgttagtcgctaagaaagctaaaacc
gtagcaaaagagaactttcatatcactgccgcttttttaggaaatacaagcttggctgat
agggttgcacttggccgcttaattgaagtagaaacctttcatgcttttaccgtatcaatg
ccccatattgctcattggccacaagctaagctgatttgtgcagaggggatggctgttgat
aagctatcttacatagctaaccaattacagaatatggcaaaagaattaggccttatgcaa
agtcaacacgactaccgaccccatgtaagcttatttagacattgcaccttaccaagtgag
caaacaagttttccattcttattaaaggcaccgattaccgtcacagcaacacaactgacg
ttatttgaatccctcaatttgcctggtggggttaagtatctacctattcagcactggcct
cttacgccataa
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