KEGG   Shewanella japonica: SJ2017_3525
Entry
SJ2017_3525       CDS       T04959                                 
Name
(GenBank) hypothetical protein
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
sja  Shewanella japonica
Brite
KEGG Orthology (KO) [BR:sja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sja03016]
    SJ2017_3525
Enzymes [BR:sja01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     SJ2017_3525
Transfer RNA biogenesis [BR:sja03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    SJ2017_3525
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 T-box Ribosomal_S21 PHM7_cyt
Other DBs
NCBI-ProteinID: ARD23774
LinkDB
Position
4178953..4179504
AA seq 183 aa
MSKSVNKRTFVGFSVGDSIANELKAQQTFIKPLVAKKAKTVAKENFHITAAFLGNTSLAD
RVALGRLIEVETFHAFTVSMPHIAHWPQAKLICAEGMAVDKLSYIANQLQNMAKELGLMQ
SQHDYRPHVSLFRHCTLPSEQTSFPFLLKAPITVTATQLTLFESLNLPGGVKYLPIQHWP
LTP
NT seq 552 nt   +upstreamnt  +downstreamnt
atgtctaaaagtgttaacaaacgcacttttgtcggtttttcggttggtgattcaatcgcc
aatgagttaaaggcacagcaaaccttcataaagccgttagtcgctaagaaagctaaaacc
gtagcaaaagagaactttcatatcactgccgcttttttaggaaatacaagcttggctgat
agggttgcacttggccgcttaattgaagtagaaacctttcatgcttttaccgtatcaatg
ccccatattgctcattggccacaagctaagctgatttgtgcagaggggatggctgttgat
aagctatcttacatagctaaccaattacagaatatggcaaaagaattaggccttatgcaa
agtcaacacgactaccgaccccatgtaagcttatttagacattgcaccttaccaagtgag
caaacaagttttccattcttattaaaggcaccgattaccgtcacagcaacacaactgacg
ttatttgaatccctcaatttgcctggtggggttaagtatctacctattcagcactggcct
cttacgccataa

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