Salimicrobium jeotgali: AAV35_006020
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Entry
AAV35_006020 CDS
T04359
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sje
Salimicrobium jeotgali
Pathway
sje03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sje00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAV35_006020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sje03019
]
AAV35_006020
03400 DNA repair and recombination proteins [BR:
sje03400
]
AAV35_006020
Enzymes [BR:
sje01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AAV35_006020
Messenger RNA biogenesis [BR:
sje03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAV35_006020
DNA repair and recombination proteins [BR:
sje03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AAV35_006020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Helicase_C_2
DUF755
Motif
Other DBs
NCBI-ProteinID:
AKG04388
UniProt:
K2GQC6
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All DBs
Position
1217276..1218775
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AA seq
499 aa
AA seq
DB search
MEPINVKKVLEDQFKFSEFRPGQENVIENALHGMDTLAILPTGSGKSLCYQLPSLILPGL
TIVVSPLISLMIDQVKQVKAKGMKRVAALHSFLSPQQKRKISGNLRKLDLLYISPEMLQM
PKMKSLLKRETISLFVVDEAHCISQWGHEFRTDYLKLHQVISDLGEPPVLALSATATPEV
QEDILFQLGRTEACKLIYPMDKPNIQLSVARIENDQEKRSFLIDFLSRQKAPSMIYFSSR
QMAEKVSLELKANSLGRIAFYHGGMDPVDRQLVQQQFMNNELDIVCCTSAFGMGIDKPDI
RIVIHYHLPPRIESFIQEIGRAGRDGEECTSLLLYAPGDERLPQMFIQSELPSHEQIDAF
LRFCYTNKKTPAYEDCIHLELSESQYNFLIANAGDKDFSLQATVRETADKLKERQLLRTE
QKQNHLIHMMEVINTPGCRRKDLYRHFQEGFQTPHQKCCDHCHPEIFQVTYESVKERQGL
PLWEERLYNIFHARSSYGQ
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgatcaacgttaaaaaagtgctggaagaccaatttaaattcagtgagtttcga
ccgggccaggaaaatgttatagagaatgcactgcacggtatggacaccctggccatttta
ccaaccggcagtggaaaatctttgtgctatcagctaccatcccttatccttccgggactg
acgatcgtcgtttccccgctgatatcgctcatgatcgatcaggttaaacaggtgaaggcg
aaagggatgaagcgggtggctgccctgcacagtttcctttccccccaacagaagagaaag
ataagcggtaatttacggaaactggatcttctttacatttctccggagatgctgcagatg
ccgaaaatgaaatcacttctgaagcgtgagaccatttccctgttcgtggtggatgaagct
cactgcatctctcaatggggacatgaattccggacggattacttgaaacttcatcaggtg
atcagtgatctgggggaacctcccgtgctggctttgagcgcaacggcgacacctgaagtg
caggaggacattctgtttcaacttggccggacggaagcctgtaaactcatttatccgatg
gataagccgaatatccagctgagcgtggccagaattgaaaatgatcaggaaaaaagaagt
tttctcatcgattttttgagtcgtcaaaaagcgccatcgatgatttatttttcaagcagg
cagatggccgaaaaagtttcgctggaattgaaagctaacagtctcggacgcatcgccttt
tatcatggtgggatggatcctgtggacaggcagctcgtccagcagcagttcatgaataat
gaactggacatcgtctgttgcacgagcgctttcggaatggggatcgacaaacctgacatc
cgtatcgtcatccattaccatttacccccaagaatagaatcgtttatacaggaaatcgga
agggcagggagagacggggaagaatgtacaagtttgctgctgtatgcaccgggggatgag
agactgccgcaaatgtttatacagtccgagcttccttcccatgaacagatagacgctttt
ctccggttctgctacacgaataaaaagacgcctgcctatgaggattgcatacatcttgaa
ttatccgagtcccagtacaatttcctcattgcaaatgccggcgacaaagacttttctctg
caggcgactgtaagagaaactgctgataagctgaaagaacggcagcttctcaggaccgaa
cagaaacagaatcacctcattcatatgatggaggtaataaacacgcccggctgccgaaga
aaagacctgtacaggcattttcaggaaggcttccagactccgcaccaaaaatgctgcgac
cactgtcacccggaaatctttcaggtgacctacgaaagcgtaaaagaacggcagggtctt
cctctctgggaagaacgcctctacaacatattccatgccaggagttcatatggacaataa
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