Scomber japonicus (chub mackerel): 128359503
Help
Entry
128359503 CDS
T09718
Name
(RefSeq) LOW QUALITY PROTEIN: cyclic nucleotide-gated cation channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
128359503
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sjo04040
]
128359503
Ion channels [BR:
sjo04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
128359503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
128359503
NCBI-ProteinID:
XP_053175972
LinkDB
All DBs
Position
5:complement(32402421..32427319)
Genome browser
AA seq
1543 aa
AA seq
DB search
MFNWVVKVVPQPPGTDEADNDPAADCSKNKGAKNPAVKNKEEASEESQGQPGVIGWLSNG
FASSLPQPANSPRLSRSNSEAVTEDGERSGVIGWVAQSLTKVLPQPDDKYRETNSPNNDE
HTEVYDVETLPDFDPLPHIPVVEMVSEDEESQVEIQTPTQFPPNVVNWIKQIIPQPLPPG
AVPEQQPSGSSRNSLDKILSPPPESLSGISLDTDSKASGVVGWFVSGLGLKIPQPTTQPK
NEALGTGEVLQKASTKLKPDMVLEDVDSDNEGQQKCKTHQQQEEIQQPRSSSVASMRSQE
PEPRESQTKLSLEDAETQTGRWTPFIENIKREAEDVALATMEERLLQERMEMARMAEEVA
RQTAENAIRQMAIEGQSIKFSLGSQELLEEPEVELPVSREESEMEHSNVNEKEENLSVEE
EEEEEEVTEEPIVSEPEPEEEEEEPQQKSPSPPPSPEPVKSPEPDPEPQPETETQEVKAE
PVTEQPQKAQEDDQDTKPDNAAEKEEEASGDGCGAPVSCDAFKSCLMRIPHTSECLGNIN
AFFKENGISPPKIPSMPTLPTQLSDVTKYLPSLPPELRQELSQIRLTQVPRSIAQTLTEL
LPRDSEGSVSPNLSTVSQTLCLKMPKKQQQQQQQQKQKTQQDLELNQLVRHSPLPPPHHP
HLRSRSPSPSSANSSALELPNVPSYPRLPPIVSPPSKQLTSPSRQLSGLSNPAFFIEDDS
DISAIRPAESSSLSLRPAVNVEDVDSDNERAGEGGGGGGEGGEGQSCIPQILTPQDPKVT
TLTVPVTPSGGRQSRRLQSQSEDDDDEASIPVRAWPSQSSLHNTDEVLKERPASSASQSS
TVVNERLQELVRMFKERTEKAKEKLIDPDSSDEDSVIHCELLPLQLSRQTGKTRRHKQVH
QEEEEEEEEEQEEEVEKDEEEGESEAEEKSSGCCKVKAPRWIQACMHYRFPASIDPFTNL
MYVLWMFLVSLAWNWNAWFIPVRWAFPYQTPDNIYYWLLTDYLCDLIYILDLTVFQPRLQ
FVRGGDVVYDKKEMRKNYMKTKRFKFDLASLVPLEFFYFKTGINPLLRLPRLLKINSFFE
FNERLEAILTKAYIYRVIRTTTYLLYCLHCNACLYYWGSAFSGLGSTKWVYNGKGNSYIR
CYYFAVKTLITIGGLPDPTTLFEIVFQLINYFVGVFAFSIMIGQMRDVVGAATAGQTYYR
TCVDNTIKYMSSYRIPKDVQNRVKTWYNYTWQSQGMLDEQELLTQLPDKMRLDIAVDVNY
SIVSKVPLFQGCDRQMIFDMLKSLRSVVYLPGDYVCKKGEVGREMYIIKAGEVQVVGGPD
GKTVFVTLRAGSVFGEISLLSVGGGNRRTANVIAHGFANLFILDKKDLNEILVHYPESKK
LLRKKARKMLNKGKKPEPKEEAKEQPSIQAAPVKQETPKLLRAALEMKQRSSGLKGALAK
VKQKTNKSSISLQPSISSSLPPPSPASSSGLERDDDTPSPMSASSTFHPASHCRNHNNNS
ATPLSASQRHSATDEPAACQKEEEDDHDEEGKEGGKEKEKKRG
NT seq
4632 nt
NT seq
+upstream
nt +downstream
nt
atgtttaactgggtagtgaaagtggtcccccaaccccccgggacagatgaagctgacaac
gaccctgctgctgactgctccaaaaacaaaggagcaaagaatcctgcagtgaaaaacaaa
gaagaggcttcagaggaaagccagggccagcctggagtaataggctggctgtctaatggg
ttcgccagctccctgccccagcctgctaactcccctcgactcagcagatccaactcagaa
gcggtcacagaggatggagaaaggtctggtgtgataggctgggtggctcagagtctgacc
aaggttctgcctcagcccgatgacaagtacagagagactaacagtcccaacaatgatgaa
cacactgaggtgtacgatgtagaaacattgccagattttgatcccctccctcacatcccg
gtggtggagatggtgtcagaggacgaggagtcacaggtggagattcaaaccccaactcag
ttccctcccaatgtggtgaactggataaagcaaataatcccacagccactgccccctggt
gctgtaccagaacaacaacccagcggttcctcccgcaactctctggacaaaattctgtct
ccaccacctgaatctctcagtggaatctcactggatactgacagcaaggcctcaggtgtg
gtcggctggttcgtgtcaggactgggcctgaagatacctcaacccaccactcaacccaaa
aatgaagctctgggtacaggtgaagttctacagaaagcttcaaccaaactcaaacctgac
atggtactagaagatgtggattcagacaacgaaggccagcagaaatgtaaaacacaccaa
caacaggaagagatacagcagccacgaagcagttcagtagcatccatgcggtcccaagaa
ccagaaccaagagagagccagacgaaattatctctggaagatgctgagacccagacgggc
cgctggacaccatttattgaaaacatcaagagggaggctgaagatgtggctttggccacc
atggaggaacgcctgctgcaggaacgcatggagatggcacgtatggctgaggaggttgcc
cggcagacagctgagaacgccattagacagatggccattgaaggacagtccatcaaattc
tcactggggagtcaagaactgctcgaggagcctgaagtcgagctgccggtgtcaagagag
gagagtgagatggagcacagcaacgtcaatgaaaaggaggagaacctttctgtggaggaa
gaggaagaagaggaggaagtgactgaagaacctatcgtcagcgaaccagaacccgaggaa
gaagaggaagagccacagcagaaatccccttctccacctccaagtcctgaaccagtgaag
tcccctgagccggaccccgaaccacaaccagagactgaaacccaggaagtcaaagctgag
cctgtaactgagcagccgcagaaagcacaggaagacgaccaagacaccaaacctgacaac
gctgctgaaaaagaggaggaagcttctggggacggctgtggtgctccagtcagctgtgat
gcatttaagagctgcctgatgcgcattcctcacacctccgagtgcctcggcaacatcaac
gcgttcttcaaagagaacggcatctcccctcccaaaataccctccatgcctacgctaccc
acccaactctctgacgttaccaagtacctaccctccctaccacctgaactgcgccaagag
ctctctcaaatcagactcacgcaggttccccgaagtatcgcccagactctgactgagctt
ttgcccagagactctgagggttcagtcagccccaacttgtccaccgtctctcagacctta
tgcctcaagatgcctaagaaacaacagcaacaacaacaacagcaaaaacagaagacacag
caagatttagaactcaaccagctcgtccgtcactcccctctccctcctcctcaccatccc
cacctccgatcccgctccccatctccatcctccgccaacagtagcgccctggagttgccc
aatgtgccgtcctaccctcgcctgccaccgatcgtcagccccccgtctaagcagctcacc
tctccgtcccgccagctttcaggtctctctaacccggcgttcttcattgaagatgactca
gacatttcagcaataagacccgcagagagctccagcctcagcctccgtccggccgtcaac
gtagaagatgtcgactcagacaatgagagagcaggagaaggagggggaggagggggggaa
ggaggggagggacagagctgtatcccccaaatcctcactcctcaggaccctaaagtaaca
accctcactgtccctgtgaccccatcaggaggtcgtcagagtaggaggctgcagtctcaa
agtgaggatgatgatgatgaagcaagcatccctgtcagagcctggcctagtcagtccagc
ctccacaacacagatgaagttttgaaagaacgtccggcatcttcagccagtcagagcagc
acagtggtcaatgagcgtcttcaggagctggtcaggatgtttaaagagagaacagagaag
gccaaggagaaactcatcgatcctgacagctctgacgaagatagcgtcatccactgtgag
ctcctgcccctgcagctcagccggcagacgggcaagacaaggaggcacaagcaggtccat
caggaggaggaggaggaggaggaggaggagcaggaggaggaggtggagaaggatgaagaa
gagggagagagtgaggcagaggagaagtctagcggctgctgcaaggtgaaagctcctcgg
tggatacaagcctgtatgcactaccgcttccctgccagcatcgaccctttcaccaaccta
atgtacgtgttgtggatgtttttggtctctctggcgtggaactggaatgcgtggttcatc
ccagtacgttgggccttcccctaccagactccagataatatttattactggctgctgact
gactacctgtgtgaccttatttacatccttgacctcaccgtcttccagccacgcctgcag
tttgtccgtggaggggacgtagtgtatgataaaaaagagatgagaaagaattacatgaaa
accaaacgcttcaagtttgatttagccagtcttgttcctctggagttcttctatttcaaa
actggtatcaaccctctgctccgcttacccaggctgctgaagatcaactctttctttgag
ttcaacgagcgtctagaggccatcttgaccaaagcctacatctacagggtgatccgtacc
accacctatcttctttactgtctccactgtaacgcctgcctttactactggggctctgcc
ttcagtggactgggttccaccaagtgggtttacaatggcaagggcaacagttacatccgt
tgttactactttgcagtgaagactctgatcaccatcgggggtctacctgatcccaccacc
ctgtttgagatagtcttccaactcatcaactactttgttggagtctttgccttctctatc
atgattgggcagatgcgtgatgttgttggagcagccacagcaggtcaaacctactaccgc
acctgtgtggacaacactattaaatacatgtcctcataccgcatccccaaagatgtccag
aaccgtgtcaaaacctggtacaactacacctggcaatcacaaggcatgctggatgagcag
gagctgctgactcagttgccagataagatgcgtctagacattgctgtagatgtcaattac
tccattgtcagcaaagttcctcttttccagggttgtgacagacagatgatctttgacatg
ctgaaaagccttcgctctgttgtttacctgccaggagattatgtctgcaaaaagggtgag
gtcggtcgggagatgtacatcataaaggcgggggaggtgcaagtggttggaggaccagat
ggaaagacagtttttgtcactctcagagcaggttcagtctttggagagatcagcttgctt
tcagttggtggtgggaacagacgcacagccaatgtgattgctcatggctttgccaatctc
ttcatcctagacaagaaagacctgaatgagatcctagtccactatcccgagtccaagaaa
ctactccgcaagaaggccagaaaaatgctcaacaagggaaagaaacctgaacccaaagaa
gaggcaaaggagcaaccctcaatacaggcggcccctgtcaagcaagagacccccaaactg
ctcagagcggccctggagatgaaacaaagatcctctggacttaaaggagctctggctaaa
gtcaaacagaagaccaacaagtccagtatctcactgcagccatccatctcctcctccctc
cctcctccatctcccgcctccagctccggactggaaagagacgatgacacaccgtcaccc
atgtcagccagctctacgtttcaccctgcttcacattgccgtaaccacaacaacaattcg
gcgacgcctctctctgcatcgcagcgccacagcgccacagacgaaccggcggcgtgtcaa
aaggaggaggaggacgaccatgacgaggaagggaaagagggcgggaaggagaaagaaaag
aagcggggatga
DBGET
integrated database retrieval system
