Scomber japonicus (chub mackerel): 128361499
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Entry
128361499 CDS
T09718
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
sjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128361499 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
128361499 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128361499 (lsm4)
03041 Spliceosome [BR:
sjo03041
]
128361499 (lsm4)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128361499 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
128361499 (lsm4)
Spliceosome [BR:
sjo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
128361499 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
128361499
NCBI-ProteinID:
XP_053177961
LinkDB
All DBs
Position
7:complement(23309725..23314075)
Genome browser
AA seq
154 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGAQQNKQQGKGRGGAGRGLFGGRGRGMTG
TGRGQQQQQQQQQQQQQQQQDKKSGKPQGMKNQH
NT seq
465 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctctcactgctgaagactgcccagaaccatcccatgctggtggagctgaag
aatggagagacatacaacggtcacctggtcagctgtgacaactggatgaacatcaacctg
agagaagtcatctgcacctcgagggatggagataagttctggaggatgcctgagtgctac
atccgaggaagcaccataaagtacctgcgaatccccgacgagatcatcgacatggtgaag
gaggaggtggtgtcaaagggtcgtgggcgtggaggcgcccagcagaacaaacagcagggc
aaaggaagaggaggagccggccgaggtctgtttggcggtcgtggcagaggaatgaccggt
actggtcggggccagcagcaacagcagcagcagcaacaacagcagcagcagcagcagcag
gataagaaatcaggcaaaccgcaggggatgaagaaccagcactga
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integrated database retrieval system
