Scomber japonicus (chub mackerel): 128373936
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Entry
128373936 CDS
T09718
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04510
Focal adhesion
sjo04512
ECM-receptor interaction
sjo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128373936 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128373936 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128373936 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sjo00535
]
128373936 (col9a2)
Proteoglycans [BR:
sjo00535
]
Extracellular matrix (ECM) proteoglycans
Others
128373936 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128373936
NCBI-ProteinID:
XP_053190114
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All DBs
Position
15:complement(21228852..21245043)
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AA seq
691 aa
AA seq
DB search
MAALSALLKTWVILQTLCLALAQVRGPPGPQGQPGPPGPSGTPGSDGIDGDKGPPGPPGP
PGQKGEPGEPGPDGVPGENGIDGLIGAKGDRGPVGSPGPKGLSGPSGEPGLPGPGLPGLS
GAPGPIGLPGEIGPNGPKGILGPPGAPGLPGPPGKPGPPGKFIGGEEGSADFQCPLNCPA
GPKGPQGLQGVKGHKGRAGILGEPGSIGKSGPRGEVGISGEQGIPGPPGPMGLRGYPGMM
GPKGEAGPRGYKGITGPVGIPGPPGEEGPQGPPGEAGDKGDKGSRGIQGPQGAVGKKGEN
GLPGIDGKDGTPGIPGMKGGPGQAGMPGPPGPQGTAGLPGSPGTKGGAGFKGEPGPRGHT
GMSGAPGPLGEPGLPGEAGMEGVPGPKGDRGQRGPVGPQGIDGKPGIKGERGPIGVPGAQ
GLSGTKGDKGFQGKVGGKGDIGDPGVEGLAGEKGEKGLSGEPGPKGQQGVRGDLGHNGPT
GDPGKPGDMGPPGLPGPRGLNGERGVPGMPGIQGSTGRDASDQHIIEVVLKMLQERLAAV
AVSAKRAVLGGAGVMGPPGPPGPPGPAGSQGPHGLPGPRGIPGIIGGPGQIGNTGLKGKR
GAKGDRGDPGKPHPGPPGPPGLQGPPGVDGVARDGRPGERGPQGSAGEAGRPGKAGSSGL
PGFCEAAMCLAASAYTSPRLQEAGTIKGPNV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctctctgccttgctgaagacctgggtaatactgcagaccttgtgcctggct
ctggcccaagtgcggggtccacctggacctcagggccagcctggcccaccaggcccttct
ggcacccctgggtcagacggcattgatggagataaaggacctcctggcccccctggacca
ccaggacaaaagggagagccaggagagccaggtcctgatggagttccaggagagaacggc
attgatggtttgattggagcaaagggtgaccgaggccccgttgggagccctggccctaag
ggtctgtctggaccaagtggcgagcctggccttcctggacccggccttccaggactttct
ggtgctccagggccaattggtcttcctggtgaaattggaccaaatggaccaaagggtatt
ctgggaccacctggagctccaggacttccgggacctcctggcaaaccaggtcctcctggg
aagttcattggtggagaggagggcagtgcagacttccagtgtcctcttaactgtccagca
ggacctaagggcccccagggactacaaggagtcaagggacacaaaggacgtgccggtatt
ctgggagagcctggtagcattggaaaatcgggacccaggggagaagtgggcatctctggg
gagcagggcatcccaggacctccgggtccaatgggcctgaggggttatccaggaatgatg
ggtcccaaaggagaggcgggtcctcgtggttataagggcatcaccggacctgtcggaatt
cctgggcctcctggtgaggagggacctcagggaccacctggagaggcaggagacaaggga
gacaaaggcagccgaggtatccaaggcccacagggtgcagtaggcaaaaagggagaaaat
ggtctgcctggtattgatggaaaagatggcacacctggtattcctggaatgaagggcggc
cctggccaggctgggatgcctggtcctcctggtcctcaggggacagcgggattacctggc
agtcctgggacaaagggtggagctggatttaagggtgaaccaggacctaggggtcacact
ggcatgtctggtgcgcctggacctctgggtgagcctggtcttcctggtgaggctggtatg
gagggagttcctggacccaagggtgatagaggtcaaagaggaccagttggaccacaagga
atcgacggcaagcctggaatcaaaggagaaagaggacccattggtgttccaggtgcccag
ggccttagtggaaccaagggagacaagggcttccaaggaaaagttggggggaaaggagac
attggtgaccctggtgttgagggactggctggcgagaaaggtgaaaagggtttgtctggt
gaacccgggcccaaaggacagcaaggagtgaggggtgatcttggacacaacggtccaact
ggagaccctggtaaaccaggtgacatgggaccaccaggactgcctggtcctaggggactc
aatggagagcgaggagtacctggcatgccaggcattcagggatcaacaggacgcgatgca
tctgaccagcatatcattgaagtggtgttgaagatgttgcaggagaggctagcagctgta
gcggtgagcgcaaagagggctgtgctcggtggagcaggtgtaatgggaccacccgggcct
cctggacctccagggccagctggctcccagggtccacatggcttgcctggtcctcgtggt
attcctggcattattggtggacctggacagattggaaacacagggcttaaaggaaagaga
ggggcaaagggtgatagaggagatcctggtaaaccccatcctggaccaccaggaccccca
ggattacagggtcctcctggtgttgatggtgtggctcgggatggtaggcctggtgagaga
ggacctcagggatcagccggagaggccggtcgccccggaaaggcgggttcgtcaggtctc
ccaggcttctgtgaggcggcaatgtgtctggcagcatcagcatacacctccccgagacta
caggaggcgggaacgatcaaaggacccaatgtttag
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