Sanguibacter keddieii: Sked_22560
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Entry
Sked_22560 CDS
T01214
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ske
Sanguibacter keddieii
Pathway
ske03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ske00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sked_22560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ske03019
]
Sked_22560
03400 DNA repair and recombination proteins [BR:
ske03400
]
Sked_22560
Enzymes [BR:
ske01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sked_22560
Messenger RNA biogenesis [BR:
ske03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sked_22560
DNA repair and recombination proteins [BR:
ske03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sked_22560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
PglZ_C
DUF8096
Motif
Other DBs
NCBI-ProteinID:
ACZ22171
UniProt:
D1BIJ4
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All DBs
Position
2507863..2510802
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AA seq
979 aa
AA seq
DB search
MTPSGDSTPAGREHDAPDGAPPAPEGDVPQGASSPLPFKPKGPKRWGVEPDWSKLPSTPR
RRYVADDGPGWGASSMDARRLVQADPVETPGPVAPGPVADPPAPSWQTPGFAPEPEPEAP
LAPHDGPPAGGSPVSQGTIPDEDDEDDELLDEDDLFDESAAPAPAPAPAPAPAPAPAPAP
ARTMIDDPRTAEPSMTGSTPTDPYGDDPYKDVPFFDEPVDDAWGEEMAAASAGRADRAGS
TGSTGSTPPSRRPSAPPAPARPAAVRVRPGADEDLRPEAEAALRRLVGRDDAVLRDDQWT
AIHALVAEQRRALVVQRTGWGKSAVYFVATSLLRARGSGPTIIISPLLALMRDQIAAAGR
AGVKAATINSANVTEWDQIHEQIASGDIDVLLCSPERLNNPGFRDEVLPRLAADAGLVVI
DEAHCVSDWGHDFRPDYRRIRTLLAELPEGIPVLATTATANARVTQDVAEQLEVTGEGAG
RSEVLVLRGGLDRESLHLNVLRLGDQPTRVAWLLEALRSTEGSGIVYCLTVSVAEQVAAQ
LKAAGLPVAAYTGRTDPTERESLEADLKANRVKALVATSALGMGFDKPDLGFVVHLGAPS
SPIAYYQQVGRAGRGVDSALVVLLPGEEDQRIWEYFGSLAFPREDQVRATLDALSRGGTQ
SAQALETQVDLTRSRLEMMLKVLDVDGAVKRVKGGWESTGQGWTYEADRYARVEQARLAE
QRTMLDYESTDGCRMAFLRRTLDDPDLAADERCGRCDNCGGSTLPAAPSTEHVAEARKAM
DVPGVVVEPRSMWPTGMPTLGIDLKGKLSPAEKTEPGRAVARLDGLGWSQPLRELFASTT
PDGEVPVHLRRAAAQVLDAWSGLSVDGVVCIRSTTRPVLVEHLARGLAKYLDKPFVGTVG
PLAGHEAPPRHDVNSAMRLAGVAQRLGLELSPAASGGLAGRSILLVDDRVASGWTLAVAG
RLLREAGAGAVLPFVLAQQ
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgaccccctctggcgacagcaccccggccggtcgtgagcacgacgctcccgacggcgca
ccacccgccccggagggcgacgtcccgcagggcgcgtcgtcgccgctgcccttcaagccc
aagggccccaagcgctggggtgtcgagcccgactggtccaagctcccgtccacgccgcgc
cgtcgctacgtcgcggacgacggccccgggtggggtgcgtcgtcgatggacgcgcgccgg
ctcgtgcaggccgacccggtcgagacgccgggaccggttgcgcccggccccgtggcggat
ccgcccgctccttcctggcagacaccggggttcgcgcccgagccggagcccgaagccccc
ctcgcgccgcacgacgggcccccggcgggaggcagccccgtctcgcaggggaccatcccc
gacgaggacgacgaggacgacgagctgctcgacgaggacgacctcttcgacgaatccgca
gccccagccccagccccagccccagccccagccccagccccagccccagccccagcccca
gcccgcacgatgatcgacgacccgaggacggcagaaccctccatgactggctccaccccc
accgacccctacggcgacgacccctataaggacgtcccgttcttcgacgagccggtggac
gacgcgtggggcgaggagatggccgcggcgtcggccggacgagcagaccgtgccgggagc
accgggagcacagggagcacgccgccgagccgacgcccgtccgccccgcccgctcctgct
cgccccgcggcggtccgggtgcgtcccggggccgacgaggacctgcgcccggaggccgag
gcagcgctgcgccgcctggtcggccgggacgacgcggtgctccgcgacgaccagtggacc
gcgatccacgcgctggtcgccgagcagcgtcgcgccctcgtggtccagcgcaccgggtgg
ggcaagtcggcggtgtacttcgtcgcgacgtcgctgctgcgcgcccgggggtcgggcccg
acgatcatcatctcgccgctgctcgccctcatgcgcgaccagatcgccgctgctggtcgg
gccggggtgaaggccgcgaccatcaactcggcgaacgtcaccgagtgggaccagatccac
gagcagatcgcctccggagacatcgacgtccttctctgctctcccgagcgcctcaacaac
ccggggttccgggacgaggtgctgccgcgcctggcggcggacgccggcctcgtggtcatc
gacgaggctcactgcgtgtcggactggggtcacgacttccggccggactaccgacggatc
cgcacgctgctggccgagctgcccgagggcatcccggtgctggcgacgaccgccacggcg
aacgcccgcgtgacccaggacgtcgccgagcagctcgaggtcaccggagagggcgcggga
cgcagcgaggtcctcgtgctgcgcggcggcctcgaccgcgagtcgctccacctcaacgtg
ctgcgtctcggcgaccagccgacgcgggtcgcctggctgctcgaggcgctgcggtcgacc
gaggggtcgggcatcgtctactgcctcacggtctccgtggccgagcaggtggccgcccag
ctcaaggcggccggtctgcccgtcgccgcgtacaccggtcgcaccgacccgaccgagcgc
gagtcgctcgaggcggacctcaaggccaaccgggtcaaggccctcgtcgcgacgtcggcg
ctcggcatgggcttcgacaagcccgacctcggcttcgtggtgcacctcggggcgccgagc
tcacccatcgcgtactaccagcaggtgggccgtgcgggacgtggcgtcgacagcgcgctc
gtcgtgctgctgccgggcgaggaggaccagcgcatctgggagtacttcgggtcgctcgcc
ttcccccgggaggaccaggtccgggcgacgctcgacgcgctgtcacgcggcgggacgcag
tctgcccaggccctcgagacccaggtcgacctcacgcggtcccggctcgagatgatgctc
aaggtcctcgacgtcgacggcgcggtcaagcgtgtcaagggcggctgggagtccaccggg
cagggctggacgtacgaggccgaccggtacgcccgcgtcgagcaggcgcggctcgccgag
cagcgcaccatgctcgactacgagtcgacggacggctgccggatggccttcctgcgccgc
actctcgacgaccccgacctcgccgccgacgagcgctgcggacggtgcgacaactgcggc
ggctccaccctccctgccgccccgagcaccgagcacgtggccgaggcccgcaaggcgatg
gacgtccccggggtggtcgtcgagccgcggagcatgtggccgaccgggatgcccacgctc
gggatcgacctcaagggcaagctctcccccgccgagaagaccgagccgggacgagccgtc
gcccggctcgacgggctcgggtggtcccagccgctgcgcgagctcttcgcgtccaccacg
ccggacggcgaggtgcccgtccacctgaggcgggccgcggcgcaggtcctcgacgcctgg
tccgggctctccgtcgacggggtggtctgcatccgctcgacgacccgtcccgtgctcgtc
gagcacctggcccgcgggctcgccaagtacctcgacaagcccttcgtcggcaccgtcggg
ccgctcgccgggcacgaggcaccgccgcgccacgacgtcaactccgccatgcggctcgcc
ggggtcgcgcagcgcctcgggctcgagctctcgcccgcggcctcgggtggtctcgcaggc
cgctcgatcctgctggtcgacgaccgcgtcgcctccgggtggacgctcgccgtcgccggg
cgactgctgcgcgaggcaggggccggagccgtgctgcccttcgtgctggcacagcagtaa
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