Shewanella khirikhana: STH12_01268
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Entry
STH12_01268 CDS
T06711
Symbol
uvrC
Name
(GenBank) UvrABC system protein C
KO
K03703
excinuclease ABC subunit C
Organism
skh
Shewanella khirikhana
Pathway
skh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
STH12_01268 (uvrC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
skh03400
]
STH12_01268 (uvrC)
DNA repair and recombination proteins [BR:
skh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STH12_01268 (uvrC)
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Ortholog
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GFIT
Motif
Pfam:
UvrC_RNaseH_dom
HHH
HHH_5
GIY-YIG
UVR
HHH_2
HHH_3
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
AZQ10393
UniProt:
A0A3Q9E463
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Position
1453761..1455581
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AA seq
606 aa
AA seq
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MFDSKTFLKTVSSASGVYRMYDAAGEVIYVGKAKDLKKRLSSYFRTNLPNVKTQALVSNI
ANVDVTLTHSETEALILENDYIKQYMPKYNVLLRDDKSYPYILLSRHTHPRLAYHRGAQR
EKGEYFGPYPNGGAVRESLNLMQKLFPIRQCEDAYYRARSRPCLQYQIGRCSAPCVGKIS
DEDYSEQVRLATLFLRGKDQQVIAALVAKMEAAAMAMEYEAAARYRDQIQALRKVAEQQN
VSGQQGDMDVIGVHYASGIACFHILFIREGKIFGSRSYFPAVPDATELAEVLRAFMLQFY
LGNEAHRSIPKEVVLGDDFEDLHELEAAMQDSLGHKLEIKTRVRAERAAFLRLASTNAAN
AVATKLAHKSTVEQRMELLEEVLGLGAPIQRMECFDISHTMGESTVASCVVFNREGPHKS
EYRRYNITGITGGDDYAAMAQALSRRFDKIERTGKVPDVLFIDGGLGQLRAAMAIVNDKF
ADMDRKPLLVGVAKGESRKPGLETLIFGGSEAEFSLESDNPALHLIQHIRDESHRFAITG
HRAKRQQTRNTSSLESIPGIGPKRRKALLQYLGGLQQVKNASVAELAKVPGISAEMAQTI
HDALRG
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgacagtaaaaccttccttaaaaccgtctccagtgccagcggtgtctatcgtatg
tacgatgccgccggcgaagtgatttacgtcggtaaagccaaagatttaaaaaaacgcctg
tcctcttactttcggaccaatctgcccaatgtaaaaacccaggcgctggtgagtaatatc
gccaatgtggatgtcaccctgacccacagcgaaaccgaagccctgattcttgaaaacgac
tacatcaagcagtacatgcccaaatacaatgtgctgctcagagacgacaagtcgtacccc
tacatattactaagccgtcacacccatcccaggcttgcataccatcgaggcgcccagcgc
gagaagggcgaatatttcggtccttatcccaatggcggcgccgtgcgcgaaagcctgaat
ttgatgcaaaagctgtttcccatccgccaatgtgaagatgcctactatcgcgcccgttcg
cggccctgtttgcagtatcagattggccgctgctcagcgccctgtgtcggaaaaatcagc
gatgaggattacagcgagcaggtgcggctcgccaccttattcctgcgcggtaaagatcag
caggtgatagcagccctggtggccaaaatggaagcggcggccatggcaatggaatatgag
gccgcagcccgttaccgcgaccaaatccaggcgcttcgtaaggtcgccgagcagcaaaat
gtgtccgggcagcaaggggatatggacgttatcggggtgcattacgcctctggtatcgcc
tgttttcatattctgtttatccgcgaaggcaaaatcttcggcagccgcagctattttccg
gccgtgcccgatgccacagagcttgccgaagtgctgcgcgcctttatgctgcagttttat
ttgggtaacgaagcccaccgcagtattcccaaagaagtggtgctgggggatgactttgaa
gacttgcacgagcttgaagcggcgatgcaggactcccttggtcataagctggaaattaaa
acccgggtgagggcggagcgagcggcgtttttacgcctcgccagcaccaatgccgccaat
gcggttgccaccaagcttgcccacaagagtaccgttgagcagcggatggagcttcttgaa
gaagtgctggggcttggtgcgcctatccagcggatggagtgcttcgacatcagccatacc
atgggtgaaagtaccgtggcctcctgtgtggtgtttaaccgcgaagggccgcacaagagt
gagtatcggcgctacaacattaccgggatcaccggcggcgacgactatgccgccatggca
caggctctatcgcgccgttttgataagattgaacgtaccggcaaggtgcctgatgtgctg
tttatcgatggcggcctggggcagctgcgcgccgcgatggcaatagtgaatgacaagttt
gccgatatggatcgtaagccgctgctggttggcgtggctaaaggggagagccgtaaaccc
gggcttgaaaccctgattttcggtggcagcgaggccgagttctcgcttgagtccgacaat
ccggcgctgcatttgatccagcatatccgcgatgagtcccatcgctttgccattaccgga
cacagagccaagcgccaacaaacccgcaatacctccagcctggaatccatccccggcata
gggccaaaaagacgcaaggcattgctgcaatatcttggtggattacagcaggttaaaaat
gccagtgtggctgagctggccaaggttcccgggatcagcgcagaaatggcgcaaactatc
catgacgcattgcgggggtga
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