Shewanella khirikhana: STH12_01851
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Entry
STH12_01851 CDS
T06711
Name
(GenBank) Pectate lyase superfamily protein
Organism
skh
Shewanella khirikhana
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta_helix
NosD
Motif
Other DBs
NCBI-ProteinID:
AZQ10951
UniProt:
A0ABM7DAV6
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Position
2105702..2108350
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AA seq
882 aa
AA seq
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MHIKTRKHWLPTTVALAVALHLGGCFSDSEDPAPTPEPPAVTPPATGGPTFPEGAIMVEA
GENLTTRIQEALINAQSGDVIVLPKGRFEIQSTLLFDGDVDGDGAFAKNVTLMGYGKDDT
ILDFANANSGDGIFVQNAMNITIQDLSVYEAKNNGIKLKNTNGIILRRLGAVWEGALDKD
NGAYGLYPVECENILIEDSYVRGSADAGIYVGQSEYIVVRNNIAKENVAGIEIENSRYAD
VYNNEAMGNTGGILVFDLPINNHRYGSSVRIFDNKVYDNNTHNFANASANPAGVHIVPPG
TGVIVLSTSDVEIFNNQITNHDTLGLTVSSFFIAEPEISDFVANYGQPGQAIEDGWRPVP
RNIYVHDNEISGYGKKPNGYLITDIINAFVLTHGAMPGILYDGLGELLANNGTAAYLGLK
EMPFADDGSDNVCMQNNGDVSLGQLYGNSNTDLSIADVMYEKTQTNLMKCAQVSLPVHTV
TFGEQIFGCGVDDDTAGCDGGNLIGGGGTIGDGDGGIIGDGDVSLCETAGSGVNWNALAK
ANCPKLSDYNLFSDGTDPTQNANGGMPYDLNTQLFTDYASKYRFVFLPDGTKAQYSENEV
FDFPVGTVISKTFALPADTAKRGIENEDLIETRLLIHRASGWTALPYVWNAQKDEAVLTK
PGAVQAKTVKHNGETLTFDYMVPSINQCKQCHQFKAEGEDYPRFVPIGPKARFLNGDFAY
QDATVNQLSRWQSAGMLQGLPDLATVPKVPAYHDGDETKVTSLDNDTLMNTAKGYLDINC
AHCHRPEGNASNTGLKLEYWRAYGDDNGFSHGTCKQPVAYGGGSLGYDVVPTKPESSIMH
FRMASNEPGDRMPEIGRSLAHTEGVALIHEWIKRLPAAACSN
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcaagactcgaaagcactggctacccacgacggtagcattggccgttgccctt
catctgggcggctgtttttccgatagtgaagatcctgcgccaacaccggagccaccggca
gtcacgccaccggccaccggcggtccaaccttccccgaaggcgccatcatggtggaagcc
ggtgaaaacctgaccacccgtattcaggaagcgctgatcaacgcccaaagcggcgatgtg
attgtgctgcccaagggccgcttcgaaatccagtccaccctgctgtttgacggcgacgtg
gatggtgatggcgcctttgccaaaaacgtgaccctgatgggctacggcaaagatgacacc
attctggattttgccaacgccaattccggcgacggtattttcgtgcaaaacgcgatgaac
attaccatccaggatctgtcggtgtatgaagccaaaaacaacggcatcaagctgaagaac
accaatggcatcatactgcgccgcctgggcgctgtgtgggaaggcgccctcgacaaagac
aacggcgcctacggcctgtatccggtagagtgcgaaaacatcctgattgaagacagctac
gtacgcggcagcgccgatgcgggcatctacgtgggtcagtctgaatacatagtggtacgc
aacaacatcgccaaggaaaacgtggctggcattgagattgaaaacagccgctacgccgac
gtatacaacaacgaggccatgggcaacaccggtggtattctggtgttcgacttgcctatc
aataaccacagatacggctccagcgtgcgtatcttcgacaacaaggtgtacgacaacaac
acccacaactttgccaacgcctccgccaacccggccggcgtgcatattgtgcctccgggc
acaggggtgattgtgctgtccaccagcgacgtggaaatcttcaataaccagataaccaac
cacgacacccttgggctgacagtctcaagcttctttatcgccgaacctgagatcagcgat
tttgttgccaactacggccaacccggccaggccattgaagatggctggcgtccggtgcca
cgcaatatctacgtgcacgacaacgaaatcagcggttacggcaaaaagcccaacggctat
cttatcaccgacatcatcaatgcctttgtgctgacccacggcgccatgccgggcatcctc
tacgatggtctgggtgaactgctggccaacaacggcaccgccgcttaccttggcctgaag
gagatgccctttgccgacgatggcagcgacaacgtctgtatgcaaaacaacggcgatgtc
agcctgggacagctctacggcaacagcaataccgatttgagcattgccgatgtgatgtat
gaaaaaacgcaaaccaatctgatgaaatgtgcccaggtcagcctgccggtgcataccgtc
accttcggtgaacaaattttcggctgcggcgtggacgacgacaccgccggctgtgatggc
ggtaacctgattggcggcggtggcaccattggcgacggcgatggcggcatcataggtgat
ggcgatgtgagcctgtgtgaaaccgctggcagcggcgtaaactggaatgcactggccaag
gccaattgccctaaactgtcggattacaatctgttcagcgatggcacagatccaacccaa
aacgccaatggcggcatgccttatgacttgaatacgcagctgtttactgactacgccagt
aagtatcgcttcgtattcctgcctgacggcaccaaggcgcagtactcagagaatgaagtg
ttcgacttcccggtgggaaccgttatcagcaaaaccttcgccctgcccgcagacaccgcc
aaacggggcatcgaaaacgaagatctgattgaaacccgtctgcttatccaccgcgccagc
ggctggactgcgctgccttatgtgtggaacgcccaaaaggatgaagccgtgctcaccaag
cccggtgccgtgcaggccaaaaccgtgaagcacaacggcgagacgctaacctttgactac
atggtgccttccatcaaccagtgtaagcagtgccaccagttcaaggccgaaggtgaagac
tacccacgtttcgtccccattggccccaaggcacgcttcctcaatggcgacttcgcctat
caggacgctaccgtgaaccagctcagccgctggcagagcgcaggtatgctgcagggcttg
cctgatttggccactgtgcccaaggtgcctgcataccacgacggcgacgaaaccaaggtt
accagtctggataacgacaccctgatgaacaccgccaaaggctatctggacatcaactgt
gcccactgtcaccgcccggaaggcaacgcctccaacaccggcctcaagcttgagtactgg
cgcgcctacggcgatgacaacggtttctcccacggaacctgtaagcagcctgtggcctac
ggcggcggcagcctgggttacgatgtggtgcccaccaagcccgaaagctccatcatgcac
ttcagaatggcgagcaacgagcctggcgaccgcatgccggaaatcggccgcagcctggcc
cataccgagggtgttgccctgatccatgaatggattaagcgtctgcctgcagccgcctgc
tccaactga
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