Staphylococcus kloosii: C7J89_12940
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Entry
C7J89_12940 CDS
T05401
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
skl
Staphylococcus kloosii
Pathway
skl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
skl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C7J89_12940 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
skl03021
]
C7J89_12940 (rpoB)
03400 DNA repair and recombination proteins [BR:
skl03400
]
C7J89_12940 (rpoB)
Enzymes [BR:
skl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C7J89_12940 (rpoB)
Transcription machinery [BR:
skl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C7J89_12940 (rpoB)
DNA repair and recombination proteins [BR:
skl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C7J89_12940 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
ATP-grasp_6
Motif
Other DBs
NCBI-ProteinID:
AVQ37032
UniProt:
A0ABQ0XN25
LinkDB
All DBs
Position
complement(2592537..2596088)
Genome browser
AA seq
1183 aa
AA seq
DB search
MAGQFVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLEEGLLEMFRDISPIEDFTG
NLSLEFVDYRLGEPKYDLEESKNRDTTYAAPLRVKVRLIIKETGEVKEQEVFMGDFPLMT
DTGTFVINGAERVIVSQLVRSPSVYFNEKLDKNGRTNYDATIIPNRGAWLEYETDAKDVV
YVRIDRTRKLPLTVLLRALGFSTDQEIIELLGDNEYLRNTLEKDGTENTDQALLEIYERL
RPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKANKKLHLKHRLFNQKLAEPIVNAETG
EIVAEEGTVLDRRKIDEIMDVLESNANSEVYELEGTVIDEPVEIQSIKVYVPNDEEGRKT
TVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGFTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQANPLAELT
HKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFG
FIETPYRKVDLETNSITDQIDYLTADEEDSYVVAQANSKLDENGRFLDDEVVCRFRGNNT
VMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPESPFVGTG
MEHVAARDSGAAVIAKHKGRVEHVESNEILVRRLIEEDGKEYEGELDRYPLSKFKRSNTG
TCYNQRPIVAAGNVVTKGEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERL
VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSDSALKNLDDRGIVYVGAEVNDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDT
LSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGTPIDIMLNPL
GVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDG
RTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTYKSDDTVGRVKTYESIVKGENITKPSVPESFRVLMKELQSLGL
DVKIMDEHDNEIDMHDNEDEDATERKVDLQQKDAPESQKEITD
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggtcaatttgtccaatatggaagacatcgtaaacgtagaaactacgctagaatt
tcagaggttttagaattaccgaacttaatcgaaatccaaacgaaatcatacgaatggttt
ttagaagaaggattactagaaatgttccgcgacatttcaccaattgaagatttcactgga
aatctttcattagagtttgttgattatagacttggtgaaccgaaatacgatttagaagaa
tcaaaaaaccgcgatacaacttatgcggcaccactacgcgtcaaagttcgtttaattatt
aaagaaactggcgaagtgaaagaacaagaagtattcatgggtgatttcccattaatgaca
gacacaggcacattcgtaattaacggtgctgaacgtgttattgtatctcaattagttcgt
tcaccatccgtttatttcaatgaaaagttagataaaaatggtcgtacaaattatgatgca
acaattattcctaaccgtggtgcatggttagaatatgaaacagatgcaaaagatgttgtg
tacgtacgtattgatagaacaagaaaattaccattaacagttcttttaagagctttaggt
ttctcaacagatcaagaaatcattgaattacttggtgacaatgaatacttacgtaacaca
ttagaaaaagatggtacagaaaatactgaccaagctttattagaaatttatgaacgttta
cgtcctggcgagccacctacagtagaaaatgcgaaaagcttattatactcacgtttcttc
gatccgaaacgttatgatttagcaagtgtaggtcgttataaagcaaacaaaaaattacat
ttaaaacatcgtttattcaatcagaaattagctgaaccaatcgttaatgctgaaactggt
gaaatagtagctgaagaaggcactgttttagaccgtcgtaaaattgatgaaatcatggat
gttttagaatctaatgccaacagcgaagtttatgaattagaaggcactgtaattgatgaa
cctgtagaaatccaatctattaaagtttatgtacctaatgatgaagaaggtcgtaaaaca
acagtaattggtaatgcattccctgattcagaggttaaatgtataactccagcagatatc
attgcttcaatgtcttacttctttaacttattaagtggcattggtttcactgatgatatt
gaccatttaggtaatcgtcgtctacgttcagtaggtgaattgttacaaaaccaattccgt
attggtttatcaagaatggaacgtgttgtaagagaaagaatgtctattcaagacactgac
tcaattacaccacaacaattaatcaatattcgtccggttattgcttctatcaaagaattc
tttggtagctctcaattatcacaattcatggaccaagctaacccattagctgagttaacg
cataaacgtcgtctatctgcgcttggacctggtggtttaactcgtgaacgtgctcaaatg
gaagtgcgtgacgttcactattctcactatggtcgtatgtgtccaatcgaaacgccagag
ggtccaaacattggacttatcaactcattatcaagttatgcacgtgttaatgaatttggc
tttatcgaaacaccataccgtaaagttgatttagaaactaattcaatcacagatcaaatt
gactatttaacagctgatgaagaagatagctatgtggtagcgcaagctaactctaaatta
gatgaaaatggtcgtttcttagatgatgaagtagtttgtcgtttccgtggtaacaacaca
gttatggcgaaagaaaaaatggactacatggacgtatcaccaaaacaagttgtttcggct
gcgacagcatgtattcctttcttagaaaacgatgactctaaccgtgccttaatgggtgcg
aacatgcaacgtcaagcggtaccattgatgaaccctgaatcaccatttgttggtacaggc
atggaacacgttgccgctcgtgactcaggagctgcagttattgctaagcataaaggtcgc
gttgaacacgttgaatctaatgaaatcttagtacgtcgtttaattgaagaagacggcaaa
gaatacgaaggcgaattagatcgttatccattatctaaattcaaacgttctaatactggt
acttgttacaaccaaagaccaatcgttgcagcaggtaatgttgtaactaaaggcgaaatc
ttagcagatggaccttctatggaactaggcgaaatggcattaggtcgtaacgtcgttgta
ggtttcatgacttgggacggttataactatgaagatgctgtaattatgagtgaacgcctt
gttaaagatgacgtatatacttcaattcatattgaagaatacgaatcagaagcgcgtgac
actaaattaggacctgaagaaatcacaagagatattcctaatgtttctgatagtgcattg
aaaaacttagatgatcgaggcattgtttacgttggtgctgaagttaatgatggtgacatc
ttagtaggtaaagtaacgcctaaaggtgtaactgaattaactgctgaagaacgtctatta
catgcaatctttggtgaaaaagctagagaagttcgtgatacttcactacgtgtacctcac
ggtgcaggcggtatcgtacttgatgttaaagtatttaaccgtgaagaaggagacgacact
ttatctcctggtgtaaaccaattagtacgtgtatatatcgttcaaaaacgtaaaattcat
gttggtgacaaaatgtgtggtcgtcacggtaacaaaggtgtaatttctaaaatagttcct
gaagaggacatgccttatttaccagacggtacgccaattgacatcatgttaaacccacta
ggtgtaccatcacgtatgaatatcggacaagtacttgaattacacttaggtatggctgct
aaaaatctaggcattcacgttgcatctccagtatttgatggtgcaaatgatgacgacgtt
tggtctacgattgaagaagcaggcatggctagagacggtaaaacagtactttatgatggc
cgtactggtgaaccattcgataatcgtatttcagttggtgttatgtacatgcttaaactt
gctcacatggttgatgacaagttacatgcgcgttcaactggaccatattcacttgtaacg
caacaaccacttggcggtaaagctcaatttggtggacaacgtttcggtgaaatggaagta
tgggcacttgaagcatatggtgctgcttatacgttacaagaaatcttaacttataaatct
gacgatactgtaggccgtgttaaaacttacgaatcgatcgttaaaggtgaaaacatcact
aaaccaagtgttcctgaatcattccgtgtattgatgaaagaattacaaagtttaggatta
gacgttaagatcatggacgaacatgataatgaaattgacatgcatgataacgaagatgaa
gatgctacagagcgcaaagttgatttacaacaaaaagatgcgccagaatctcaaaaagaa
atcactgactaa
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