Sinorhizobium kummerowiae: PZL22_001974
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Entry
PZL22_001974 CDS
T09063
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
skm
Sinorhizobium kummerowiae
Pathway
skm03410
Base excision repair
skm03430
Mismatch repair
skm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
skm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PZL22_001974 (recJ)
03430 Mismatch repair
PZL22_001974 (recJ)
03440 Homologous recombination
PZL22_001974 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
skm03400
]
PZL22_001974 (recJ)
DNA repair and recombination proteins [BR:
skm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PZL22_001974 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PZL22_001974 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PZL22_001974 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Toprim
Motif
Other DBs
NCBI-ProteinID:
WHS94262
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All DBs
Position
complement(572195..573997)
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AA seq
600 aa
AA seq
DB search
MDVLADPIQRAFLGVERSVSGQRWVSRLDQAGQNRALAISQVHGYSELIARVLAGRGVGL
DDAAAFLEPTLRALMPDPDTLTDGRKAAERLADAIRRREKVVIFGDYDVDGAASSALMAR
FLRHFDITAEIYIPDRIFEGYGPNPQAIDQLIDRGSELIVTVDCGSTSHEALAVAAERRT
DVVVIDHHQVGSVLPPCHALVNPNREDDLSGQGHLCAAGVVYLVLVNTLRVLRLRGDPRA
ASFDLLSLLDLVALATVCDVVPLKGLNRAYVVKGLLAARHMGNAGLAALLRKAAIGGPVT
PYHLGFLLGPRINAGGRIGDAALGSRLLTLDDAAAAEAIASQLDELNRDRQAMEAAMLAE
AEAEVLAEYGTGEGASVIVTARQNWHPGIVGLIAARIKEKFRRPAFAIAFDPNGRGTGSG
RSINGFDMGRLVRAAVDNGLLVKGGGHAMAAGLTVERGKLGQLRQFFEERAETAIRDLVA
VQTLKVDGALAAAGATLDLVDLLDQAGPYGSGHPQPLFAFPQHRLRDSRQVGANHVKVTL
EGQDGSRMEGIAFRAMDTPLGDFLLGNRGATVHVAGSVSADLWQGTRKVQLRVTDAAKAN
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggacgttttggcggatccgatccagcgggcatttctcggcgttgaacgctcagtcagc
ggtcagcgctgggtgtcgcgcctcgatcaggcgggccagaaccgtgcgctggccatcagt
caggtccacggctattccgaactcatcgcccgcgtgcttgccggacgcggcgtcggactg
gacgacgcggcggcattcctcgagccgacgttgcgcgcactgatgcccgatcccgacacc
ctgaccgacggccgcaaggcggccgagcggctcgcggatgctattcgtcgccgcgagaag
gttgtgatcttcggggactacgatgtcgatggtgcggcctcatccgcgctcatggcgcgt
ttcctgcggcatttcgatatcacggccgagatctatattcccgaccgcattttcgagggc
tacggaccgaacccgcaggcgatcgatcaattgatcgatcggggctccgaactgatcgtc
acggtcgactgcggctcgacgagccatgaagcgctggcggtggcggctgagcgcaggacc
gatgtcgtggtcatcgaccaccatcaggtaggctcagtgctgccgccgtgtcacgccctg
gtgaatccgaaccgggaggacgatctgtcggggcaggggcatctctgcgccgcgggcgtc
gtctatctggtactcgtcaatacattgcgcgtgctccgcctcaggggcgacccgcgcgcg
gcatccttcgaccttctgtcgctgctcgatctggtggcgcttgcgaccgtctgcgacgtg
gtgccgctcaagggtctcaaccgggcctatgtcgtcaagggactgcttgccgcacggcat
atgggcaatgcgggtcttgccgcactcttgcgcaaggcggcgatcggcggacccgtgacc
ccctatcatctcggcttcctgcttggcccgcggatcaatgccggcgggcgtatcggcgac
gctgcgctcggcagccgtctgctgaccctcgacgatgcggcggcggcggaagccatcgcc
agccagctcgatgaactcaatcgcgatcgccaggcgatggaggcggcgatgcttgcggag
gcggaagccgaggtgctggcggaatacggaacgggcgagggcgcgtcggtgatcgtcaca
gccaggcagaactggcaccccggcatcgtcggtctcatagcggcacgcataaaggagaaa
ttccgccggccggcctttgcaattgcgttcgatccgaacggccgtggaaccggatccggc
cgttcgatcaacggtttcgacatggggcggctcgtccgtgcggccgtcgacaacggcctg
ctggtcaaaggcggtgggcacgcaatggctgccgggctgacggtcgagcgcggtaagctc
ggccagcttcggcaattcttcgaagagcgcgcggaaactgccattcgcgatctcgtcgcc
gtccaaacgctcaaggtcgatggcgcgctggccgccgccggggcgacgctcgacctcgtc
gaccttctcgaccaggcgggcccttatggctccggccatccgcaaccgctctttgccttc
ccgcaacatcggctgcgggatagccgccaagtcggggccaaccacgtgaaggtgacgctc
gaggggcaggacggcagccgcatggaaggcatcgccttccgcgcgatggacacgccgctc
ggcgatttcctgctcggcaaccgcggcgccaccgttcatgttgcgggttccgtgtcagcg
gatctgtggcaggggacacgcaaggttcaactgcgtgtgacggacgcggcgaaggctaac
tga
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