Stenotrophomonas lactitubi: AB9L18_16495
Help
Entry
AB9L18_16495 CDS
T10939
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
slab Stenotrophomonas lactitubi
Pathway
slab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AB9L18_16495 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slab03021
]
AB9L18_16495 (rpoB)
03400 DNA repair and recombination proteins [BR:
slab03400
]
AB9L18_16495 (rpoB)
Enzymes [BR:
slab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AB9L18_16495 (rpoB)
Transcription machinery [BR:
slab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AB9L18_16495 (rpoB)
DNA repair and recombination proteins [BR:
slab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AB9L18_16495 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
XGY85283
LinkDB
All DBs
Position
complement(3605948..3610102)
Genome browser
AA seq
1384 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENVDPAKRTDHGLHAALKS
VFPIASYSGNAALEYVGYKLGDPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD
EGVQLELVPERLRGETLGFDLADGDKVIVEAGKRITARHIKQLEASGIAALAVPDDYIVG
RILSHDVVDASTGELLAQANDEITDEQLQNFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSAVGRMKFNRRVGRKET
TGEAVLYDRKYYGERNDEESKRLVAAHGDSSDILDVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVYARTNQYGFLETPYRKVVDGKVFDEVEFLSAIEENEYVIAQANALTDANSVLTEQ
FVPCRYQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQAVPT
LRAQKPLVGTGIERAVARDSGVTVNARRGGEIVQIDAARIVVKVNEAEITDASDAGVDIY
NLIKYTRSNQNTCINQRPLVEVGNVVARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVVNGGAGLK
KGDVISDAYLDGLKKADWFVLRMKDEDAAEAIERAQKQIQAHEKEFERRFADKRGKITAG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMASGETVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGRKIQAMLEAQAAVADLRKFLDDIYNHDDTNVANR
VDLSQFSDEELLRLARNLFDGVPMATPVFDGATEAEIKRMLELADLPSSGQTQLYDGRTG
EAFDRHTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LEDN
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcctattcgttcaccgaaaaaaagcgtatccgcaaggatttcggcaagcagcgt
tcgattctcgaagtgccgttcctgctcgccatccaggtggattcctaccgtgaattcctg
caggaaaacgtcgatccggccaagcgcacggaccacggcctgcacgctgcactgaagtcg
gtcttcccgatcgccagctacagcggcaatgctgccctggagtacgtcggctacaagctg
ggcgatccggtcttcgacgagcgtgagtgccgtcagcgtggcatgagctacggtgcgccg
ctgcgcgtgaccgtacgcctggtgatctacgaccgcgagtcgtcgaccaaggccatcaag
tacgtgaaggagcaggaggtctacctcggcgaaatcccgctgatgaccgacaacggcacc
ttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagctgcaccgctcgccgggcgtg
ttcttcgaccacgaccgtggcaagacccacagctcgggcaagctgctgtacagcgcccgc
atcattccttaccgcggctcctggctggacttcgagttcgacccgaaggacgcgctgttc
acccgtatcgaccgtcgccgcaagctgccggtgtcgatcctgctgcgtgcgcttggctac
agcaacgaagagatgctggccgagttcttcgagatcaacaccttccacatcaacccggat
gaaggcgtccagctggagctggtgccggagcgcctgcgcggcgaaaccctgggcttcgac
ctcgccgacggcgacaaggtcatcgtggaagccggcaagcgcatcaccgcgcgccacatc
aagcagctggaagcctcgggcattgccgccctggccgtgccggacgactacatcgtcggc
cgcatcctgtcgcacgacgtggtcgatgcctcgaccggtgaactgctggcccaggccaac
gacgaaatcaccgacgagcagctgcagaacttccgcaaggccggtgtcgatgcagtgggc
accctgtgggtgaacgacctggatcgtggcccgtacctgtccaacaccctgcgcatcgat
ccgaccaagacccagctggaagccctggtcgagatctaccgcatgatgcgtccgggcgag
ccgccgaccaaggatgctgcgcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccgccgtcggccgcatgaagttcaatcgtcgcgtgggccgcaaggaaacc
accggcgaagccgtgctgtacgaccgcaagtactacggcgagcgtaacgacgaagagtcc
aagcgcctggttgccgcccacggcgacagctcggacatcctggacgtgatcaaggtcctg
accgagatccgcaacggccgtggcgtggtcgatgacatcgatcacctgggcaaccgtcgc
gtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtgggcctggtccgcgtcgag
cgcgcggtcaaggaacgcctgtcgatggcagagtcggaaggcctgaccccgcaggagctg
atcaacgccaagccggtggctgcggcgatcaaggaattcttcggctcctcgcagctgtcg
cagttcatggatcagaacaacccgctgtcggaagtcacgcacaagcgtcgcgtctcggcc
ctgggcccgggcggcctgacccgtgagcgcgccggcttcgaagtgcgcgacgtgcacccg
acccattacggccgcgtctgcaccatcgaaaccccggaaggcccgaacatcggcctgatc
aactcgctggccgtgtacgcccgcaccaaccagtacggtttcctcgagaccccgtaccgc
aaggtcgtggacggcaaggtcttcgacgaagtcgagttcctgtcggccatcgaagaaaac
gagtacgtcatcgcccaggccaacgccctgaccgatgccaacagcgtgctgaccgagcag
ttcgttccctgccgttaccagggcgaatcgctgctgaagccgccggcggaagtccacttc
atggacgtctcgccgatgcagaccgtgtcgatcgcggccgcgctggttccgttcctggag
cacgatgacgccaaccgcgcactgatgggcgccaacatgcagcgtcaggccgtgccgacc
ctgcgtgcgcagaagccgctggtcggtaccggcatcgagcgcgccgtggcgcgtgactcg
ggtgtgaccgtgaacgcccgtcgtggtggtgagatcgtgcagatcgacgccgcccgcatc
gtggtcaaggtcaacgaagccgagatcaccgatgcgtccgatgccggcgtcgacatctac
aacctgatcaagtacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtg
gaagtgggcaacgtggtggcgcgtggcgacgtgctggccgacggtccgtccaccgacatc
ggtgaactggccctgggccagaacatgctgatcgccttcatgccgtggaacggctacaac
ttcgaagactccatcctgctctccgagcgcgtggtggaagaggatcgctacaccacgatc
cacatcgaagagctgacctgcgttgcgcgtgataccaagctggggccggaggaaatctcc
gccgacatcccgaacgtctccgagcaggcgctgaaccgcctggacgagagcggcgtggtg
tacatcggtgccgaagtccgcgccggcgacatcatggtcggcaaggtcaccccgaagggc
gaaagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgagaaggcttcg
gacgtgaaggacagctcgctgcgcgtgccgccgggcatggacggcaccgtcatcgacgtg
caggtcttcacccgcgatggcatcgagaaggacaagcgcgcccgtcagatcgaagagtct
gaaatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctggaagcggccatc
tacgcccgtctgcgttcgcagatcgtgggcaaggtggtcaacggcggcgccggcctgaag
aagggcgacgtcatttccgacgcctacctggatggcctgaagaaggccgactggttcgtg
ctgcgcatgaaggacgaggacgctgccgaagccatcgaacgcgcacagaagcagatccag
gcgcacgagaaggaattcgagcgtcgcttcgccgacaagcgcggcaagatcaccgcgggc
gacgatctggctccgggcgtgctgaagatggtcaaggtgttcctggccgtgaagcgccgc
atccagccgggcgacaagatggcaggccgccacggcaacaagggtgtggtgtccaacgtg
gtgccggtagaggacatgccgtacatggcctcgggcgaaaccgtggacatcgtgctgaac
ccgctgggcgtgccgtcgcgtatgaacatcgggcagatcctggaagtgcacctgggctgg
gccgccaagggtctgggtcgtaagatccaggcgatgctggaagcccaggcggcggtcgcc
gacctgcgcaagttcctggacgacatctacaaccacgatgacaccaacgtggccaaccgt
gtcgacctgtcgcagttcagcgacgaggaactgctgcgcctggcccgcaacctgttcgac
ggcgtgccgatggcaacgccggtgttcgacggtgccaccgaagcggaaatcaagcgcatg
ctggaactggccgacctgccgagcagtggccagacccagctgtatgacggccgcaccggt
gaagccttcgatcgccacaccaccgtgggctacatgcactacctgaagctgaaccacctg
gtcgacgacaagatgcacgcccgttcgaccggtccgtactcgctcgtcacccagcagccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggtgaaatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgatgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgacggtgagcacgagatggtcgcgggc
atgccggaatccttcaacgtgcttgtgaaggaaatccgctcgctggccatcaacatggaa
ctggaagacaactga
DBGET
integrated database retrieval system
