Silene latifolia (white campion): 141585978
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Entry
141585978 CDS
T11116
Name
(RefSeq) uncharacterized protein LOC141585978 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141585978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141585978
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141585978
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
141585978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
141585978
NCBI-ProteinID:
XP_074263169
LinkDB
All DBs
Position
6:complement(3045541..3068951)
Genome browser
AA seq
2380 aa
AA seq
DB search
MQEFSSTVASHVRFLIRSLNGSNSDSVLQELRQFSDYGLEGSILTLQSCLDYINIYENEV
KNDHLHPAFASLFRFILGKPNFSSILCQSLRHVAIREGFLDDLSNLFCLSLSEKIAVGLA
LSESENSEARLVGTNFCMTHVESLFDNPSILESDEQIQNIFMFLHRCEGLSKHVDTFTQM
LSLMQPKEAVPSVLGPMILDELNDTKLLRNMDLFYDSNDDFDSLVAEMEKEISMADVMKE
LGYGCSTDASKCKEILSLYLPLTEVTVARILGTVVRTHAGLEDSSTAFSAFLSAIGSNAM
FELPRLSSWNVNILVDSIKQLAPDTNWVKVMENLDHEGFYISSEDAFSFFMTIYKCACQE
LFPIHAICGSVWKNSEGQLSFLKYAVSMPPEIFTFSHSIRKLAYVDVHGLSSQLGQSNNA
WLCLDLLDVLCQLAERGHAATIQSMLEHPLKHCPEVLLLGIAQIHTTYNLLQHEVSSNAL
PRVIANASRKGFILHLWHINHNLVLRGFVDTLTKDPDSVHRILDICQENKIINLVLERIP
FSLAIRLAAVAFQKELLDFEKWLNDNIIISKEAFFEECLKYVKEIQLQTVSDDAANRLHH
TTSAGTLGFPTARIILKVLEANAQTLTLKSLSDEIGEMLTSVENHHSSQHSDGVIDSSSS
NSYSEDIESEANSYFQRMFAEQQSIDEMVQMLARFKESSVKREQSIFDCMISNLFEEYRF
FPKYPEKQLGLAAILFGCIIKHQLVTHLPLGIALRCVLDALRKPADSKMFAFGTKALEQF
ISRLEEWPQYCNHILQISHLRSTHPNVVEYIDGVLARKSHGGNGPVDQLNISSLGTTVNE
LIGSNSSHPGQQLSSSLRFQPRQSALVEEGAKASTTMNSFTKPPIAASVQPTATSSADSV
SLPKLQSAQSAPGMLSISSAFSRNRGSTTRFGSALNIETLEAAAERRETPIEAPSSEVQD
KISFIINNISSANVETKAKEFSEILKEQYYPWFAQYMVMKRASIEPNFHELYLKFLDKFN
SKALNKEIVQATYENCKVLLGSDLIKSSSEERSLLKNLGSWLGKLTIGRNQVLRARDIDP
KSLVIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILALLAEIYAMPNLKMNL
KFDIEVLFKNLGVLIKDVTPSSLLRERVRVIEGNPDFSNKDVGVPQPTVDEKSMVLTALN
QVELPLEVSTPSQLGGHTHQISPYGTTAATLVEDDNLSSTVFSDPLPSAPVVQQPTQTQS
SYVGQLPSSVPNIGSHFVVNPKLQNLGPHFQRVLPVAMDRAYKEIVNGIVQRSVSIATQT
TKELVIKDYAFESDESRIFNAAHLMVASLAGSLAHVTCKEPLRASISSQLRNLLQGLAIG
DMLEQTVQLVTNDNLDLGCALIENAATERAVQMIDGEISQQLSLRRKHRENVGSSMYDAS
IYAQGMGVLPETLRPTPGRLSDSQQRVYQDFVRLPWQNQQSIQTANATHLPSLDGGNFPL
TISTSSGQISSSVYPSGLGNSSFGVGAPHIDLVPEEMEKSQAQLFSPVALNHIRSSENSV
PFRSEADSMPLSSLSAPNLEAQSVEPVPSEPVGSSQLPSLSSASLGTGLSEPMATEDALD
KYHMLALKLDAALANDNEESDIQAIIVEVPKMILKCGNRDEAALAVAQKVFKALYETGGN
SFHVNAHLAILASIRDVCKLVVKELTTWVIYSDEERKFNRDITVGLIRRELLNLAEYNIH
LTKLLDAGRNKAATEFAVSLLQTLKKEEPKVISELQNLLEALAKLATRPGSPESLQLLVE
IVKNPAATASGLPSPVTAKDDKNRLTRDKKVLQSMASRGDTNNVEVMEPEASSFQQQVST
LFAEWYRISELPAGNDAPCTKFMLHLHQIGLLRGDDKTERFFRVLLEISVSHFGELMQKS
PQVHTPFLAIDIYAKLVYSILKYWPVDQGSSKLFLLPKILTVTVRSIQKDADEKKEDFNP
RPYFRLFINWLLDIGSIDVHDGVNFQVLSFFANAFHALQPLKVPGFSFAWLELVSHRTFM
PKLLTGNAQKGWPLLHRLLMDLFQFMEPFLRNAELGELIRILYKGTLRVLLVLLHDFPEF
LCDYHFSFCDVIPSSCIQMRNIILSAFPCNMRLPDPSTPNLKIDLLAEMSQAPRILSDVD
AALKAKQMKADVDEYLRTKQGPLLKELKHRLLLSPNEVSHAGTRYNVPLINSVVLYVGMQ
AIQLLQARNRSQTQSGSADPSVDNAALAIFESLIKDLDTEGRYLFLNAIANQLRYPNTHT
HYFSFIMLHLFSQPEKEIIKEQITRVLLERLIVNRPHPWGLLITFIELIKNPSYYFWSQS
FTRCAPEIEKLFESVSRSCGGPKPVNENMVGSGALSDGVH
NT seq
7143 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaattctcgtcgacggtcgctagtcatgtccgatttctcatccgtagcttgaac
ggatctaactctgattccgtcctccaagaacttcgtcagttcagcgactatggattggaa
ggaagcatattaacccttcagagctgtttagactacatcaatatttatgagaatgaagta
aagaacgatcatttgcatccggcttttgcatcattattcagattcattttggggaaacca
aacttcagctctattctgtgccagtctttaagacatgtggcaatccgggaaggatttctt
gatgatttatcaaacctgttctgtctttcactttctgaaaaaattgctgttggacttgca
ttgtcagaatctgaaaattctgaagccagattagttgggactaacttttgcatgactcat
gttgagagtttgtttgataatccaagcattttagagtcggatgaacaaattcagaatatt
tttatgtttctccatcgatgtgagggcctctcgaaacatgtagacacatttacgcagatg
ctgagcttaatgcaaccaaaagaggctgtcccatctgtcttgggtccaatgatccttgat
gagctgaatgatactaagttattgaggaatatggacttgttttatgattccaatgatgac
tttgattctcttgttgctgaaatggagaaggagatcagtatggcagatgtgatgaaggaa
ctgggctacggatgttcaactgatgcatcaaagtgcaaggagattttgtctctttatctt
ccacttactgaagtaactgttgctcggatacttggcacagttgtgcgcactcatgctggt
ctcgaagacagcagtactgcattttcagcatttctttctgcaattggtagcaatgccatg
ttcgagcttccacgtcttagctcatggaatgttaacatcctggttgactctattaagcag
ctagcacctgacaccaactgggttaaagttatggagaatcttgaccacgagggattttac
atttctagtgaggatgctttctcatttttcatgactatttacaagtgtgcttgccaggag
ttgtttccgattcatgctatttgtggttcggtctggaagaattctgaagggcagctgtcc
tttcttaagtatgctgtatccatgccgcctgaaatatttacattttcccattcgatcagg
aaactggcgtatgttgatgttcatggtctgagctctcaacttggacaatcgaataatgca
tggttatgtctggatctactggatgtgctgtgccaattggctgagaggggtcatgctgct
actattcagtccatgctggagcatcctcttaaacactgccctgaagtactgctacttggg
attgcacaaattcatacaacatacaatcttcttcagcatgaagtatcttctaatgctctt
ccaagggtaattgctaatgctagcaggaaaggattcattcttcacctttggcacatcaac
cataacctggtgctgcgtggatttgttgacactcttactaaagatccggacagtgtccac
aggattctagatatatgtcaggaaaataagattataaatcttgttttggagaggattccg
ttttctctggctatcagactggcagctgttgcttttcagaaggaactcttagattttgag
aaatggctgaatgataatatcatcataagtaaagaagcctttttcgaggagtgtttgaag
tatgtgaaggagatacagctacaaacagtctcagatgatgctgccaaccgattgcatcat
actacttcagctggtactcttggattcccaacagctagaattatcttgaaggtccttgaa
gctaatgctcagactttgactttaaagagtctttctgatgaaattggcgaaatgcttaca
tccgtagagaatcatcattcgagtcagcatagtgatggggttattgattcctcttcctcg
aactcatattctgaagatattgagtccgaagcaaattcgtatttccagcgcatgtttgct
gaacaacagtcaattgatgagatggttcaaatgcttgctcgttttaaagaatcctcagtg
aaaagggaacaatctatttttgactgcatgatatccaatctttttgaagaatataggttc
ttccctaaatatcctgagaaacagcttggattagctgccatcttatttggctgtatcatc
aaacatcaactagtaactcatctgcctcttggcatcgcacttcgttgtgttctggatgca
ctgcgcaagcctgccgattcgaagatgtttgcatttggcacgaaggctttggagcagttt
attagtcgtttggaggagtggccccaatattgcaaccacatcttacagatatctcatctc
cgtagcactcatcctaatgttgttgaatatatagatggggtccttgcgagaaagtcccat
ggaggaaatggtccggttgaccaacttaacatttcttctctggggacaacagttaatgag
ttgatcggatctaatagttcacaccccgggcaacaactctcatcatctcttcggtttcag
ccgcgacaatcagctttggttgaagaaggagcaaaggcttcgactactatgaacagcttc
acaaaaccacctatagctgcttcagttcaacctactgcaacatcgtcagctgacagtgtc
agcttgcctaagctacaaagtgctcaaagtgcccctgggatgctatcaatttcctcggca
ttttctcgtaacagagggtctaccacaaggtttggttctgcattgaacatagagacgctt
gaagctgctgctgaacgcagagaaactccaattgaggcaccgtcttccgaggttcaagac
aaaatttcatttataatcaacaacatttcttcagctaatgttgaaactaaagccaaagaa
ttctccgaaattctgaaggagcaatactatccttggtttgcgcagtatatggtgatgaaa
agggcaagcatcgagccaaattttcacgagttatatctgaagtttctggacaagtttaac
tcaaaagctttaaacaaagaaattgttcaagcaacttatgagaattgcaaggttttacta
ggttcagacctcataaagtctagctcagaagagcgttcgttgctaaagaatttgggcagc
tggcttgggaagcttacaattggtagaaaccaggttttaagggcacgcgacattgatccc
aaatctttagttatagaggcctacgagaaggggctaatgattgctgtgattccatttact
tccaagatactggagccatgtcaaagtagtctggcttatcaaccccctaatccatggacg
atggggattcttgctttactcgctgagatctatgcaatgccaaatttgaaaatgaatctc
aagtttgatatcgaggtacttttcaaaaatcttggcgttctgattaaagatgtgacccca
agttctcttttaagagaacgtgtcagggtaatcgaaggaaatccggatttctcgaacaaa
gatgttggtgtacctcagccaacggtcgacgagaaatctatggtacttacggctttgaac
caggttgaattgcctcttgaggtatctactccatctcagcttggtggtcacacacatcaa
atctctccgtatggaaccactgccgctactttggtcgaggatgacaacttatcttctaca
gtattttctgacccacttccttctgctcctgttgtgcaacaacctacccaaactcaatcc
tcatacgtggggcagctaccctcatcagttcctaatataggatcacattttgttgtgaac
ccgaagcttcaaaatttgggccctcattttcaaagagtgcttcccgtcgccatggataga
gcttataaagagatagtaaatggtatagtgcagcgtagtgtttccattgcaactcagacg
acaaaagagcttgtcattaaggactatgcattcgagtcggatgaaagtcgcatattcaat
gctgcacatctgatggttgctagtcttgctggtagcctagctcatgtaacttgcaaggaa
cctctccgtgcctcaatttctagtcagcttcgcaacttgctgcagggtttagctatcgga
gatatgttggagcaaacagtgcaacttgtaaccaatgataaccttgatttgggttgtgcc
ttaattgaaaatgctgcgaccgagagggccgttcaaatgattgatggggaaatctcacaa
caactttctttgagaaggaagcatagagaaaatgttggttcctctatgtatgatgctagc
atatatgcccaaggcatgggtgtcctaccagaaactttgcgtcctactcctggacgcttg
tctgattctcagcagcgtgtttatcaggactttgtccgccttccttggcagaatcagcaa
tctattcagaccgctaatgctactcatcttccttcattagatggtggtaacttcccactc
acaatcagcacttcttcagggcaaataagctcaagtgtatatccctctggactaggaaac
agtagctttggtgtgggtgctccgcatattgatctcgtaccagaggaaatggaaaaatct
caagctcagttgttcagccctgttgcgctaaaccacataagaagttctgaaaattcagtt
ccttttcgttccgaggctgattcaatgcccctgtcctctttgagcgcaccaaatctggaa
gcacaatcagttgaaccagtcccaagtgaacctgttggtagctcacagctgccatctctg
agctctgcatcattaggaacaggtctttccgaacccatggctactgaagatgccctggac
aaatatcacatgctcgcgttgaagctggatgccgcactagctaatgataacgaagaatca
gatattcaggcaattattgtagaagttccaaaaatgattctgaaatgtggtaatcgagat
gaagctgccttggctgtggcgcaaaaggtattcaaagctttatatgagactggaggaaac
agtttccatgttaatgctcatcttgctatcttggcttctatccgtgatgtttgcaagctt
gtggtgaaggagcttactacttgggtgatttattcagatgaggaacgaaaattcaacagg
gatataacggttggccttatcaggagggagttacttaatttggcagaatataacattcat
ttgacaaagcttcttgatgctggaagaaataaagctgcaactgaatttgcggtctcgctt
ctgcaaacattgaagaaagaagaacctaaggtcatctcagagctccaaaatttacttgaa
gcattagccaagcttgccactaggcctgggtcccccgagtctctgcagctattagttgaa
attgtaaagaacccagcggctactgctagtggccttccgagccccgtcactgcaaaggac
gataagaacagactcactagagacaaaaaggttctacagtcaatggcaagtaggggagac
actaacaacgtagaggtcatggagccggaggcttctagcttccagcagcaggtttctaca
ttgtttgccgaatggtaccgtataagtgaactgccagctggaaatgatgctccctgcaca
aaattcatgttacatctacatcaaattggtcttcttagaggagatgataaaacagaacgc
ttcttccgcgttcttttggaaatttctgtgtcgcactttggtgagctgatgcaaaaatct
ccacaagtgcatacaccctttctcgctattgatatttatgctaagctagtatattcaata
ttaaagtattggcctgttgaccagggatcgagcaagctttttctcttaccaaagatttta
acagtcactgtacgatccatccaaaaagacgctgatgagaaaaaagaagattttaatccg
aggccttattttaggctgttcataaattggctgttagacattggttccatagatgtccat
gatggggttaactttcaggttttgtcattttttgcaaatgcattccatgctttgcagccc
ctgaaagtaccaggtttcagctttgcttggcttgagctcgtgagtcacaggactttcatg
ccgaaattgctgactggaaatgctcagaagggttggcctctactacatcgcttgttaatg
gacttgtttcagttcatggagcctttcttgagaaatgctgaacttggagagctgattcgc
attttgtacaaaggaactctcagagtgctgttagtgttgctgcacgattttccggaattt
ttgtgtgactatcattttagcttttgtgatgtcattccttctagctgcatacagatgcga
aatataatccttagtgcatttccttgtaatatgagacttcctgatccatctactccaaac
ttgaagattgatttactggcagagatgagccaagcacctcgtattctgtccgatgttgac
gcggctctaaaggcgaagcagatgaaagctgatgttgacgagtatctcaggacaaaacag
gggccccttctgaaagaactgaagcacagactgctactttcacccaatgaggtttcacat
gctgggactcgttacaatgtgccgctgatcaattctgttgtgctttatgttgggatgcag
gctattcagctgcttcaggctcgaaatagatctcaaacccagtcaggtagtgcggatcca
tcagtcgataatgcggcactagcaatttttgaatctttaatcaaagatttggatactgag
ggccgctatctattcctaaatgccattgctaaccaattgcgctatccaaatactcacaca
cattacttctctttcatcatgctccacttattttctcagccagaaaaggaaataattaag
gaacaaatcaccagagtactgttggaacgccttattgtgaatagaccacatccatggggt
cttctaattacgttcattgaacttataaagaacccgagctactacttctggtcccaaagt
ttcacaaggtgtgctcctgaaatcgagaaattattcgagtcagtctcaagatcctgtgga
gggccaaagcctgtaaatgaaaacatggttggttctggagcattgtccgatggtgtacac
tga
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