Silene latifolia (white campion): 141586588
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Entry
141586588 CDS
T11116
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141586588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141586588
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
141586588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_17
TPR_14
TPR_16
TPR_8
TPR_12
TPR_CcmH_CycH
TPR_7
TPR_19
TPR_9
ARM_TT21_C
BTAD
TPR_15
Motif
Other DBs
NCBI-GeneID:
141586588
NCBI-ProteinID:
XP_074263980
LinkDB
All DBs
Position
6:complement(26948985..26966508)
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AA seq
1165 aa
AA seq
DB search
MELTEEDNQNSLEFNPDDPSHQFDLGKLLWERGVEWREKAAEHFLKAAKLNPQSGEAFKY
LGHYYGNVDIQRAVKCYQRAVSLNPDDSDAGEALCNLLDKDGKESLEVALCKEASSKSPR
AFWAFSRMGCLLVHQKKWSEAVQSLQHAIRGYPSSADLWEALGLSYQRLGMYTAAIKSYA
RAMELESSRTFAMVESGNIYLMLGWYRKGIDQFREALEIRPQCTSGQYGLAFGLLALSKE
CIKQGAFSWASSMLEEASKVAEASTHLASNMSCLWKLHADIKLTYAKSFPWTGEDQKDEV
AFSNSLLSWKETRYSAAMSGKRSYQRALHLAPWQANIYMDIAVAINLISSLKGSQQDDLD
AWNPAEKMLLGSLLLESDNYEFWMALGCVSGHKALRQHSFIRGLRLDVSLASAWAYLGKL
YKEEGESQLGRQAFDRARSIDPSLALPWAGMSAEIVTSESSSDEAYDSCLRAVQILPLAE
FQIGLAKLARISGHLLSSEVFGAIRQAVQCAPSYPESHNICGLVYEGRHDYEGAVTSYQL
ARCAWKISAFPLPQSYFADISVNLARALCKAGNVLAAVRELEHLKERGLLNVEGLQVYAV
ALWNLGKNDLALSAARDLAKCVPTINMSSAAAAICLICALLYSISGAGSATNSILKMPRE
LLQSAKVSFVVSAVDVVDQTNQLQAAVSSSRGSLSSQEEIIEMHLLVALGKLIRNGSGRN
LSIQRGIDHLRKALHMYPNASSLRNMLGYLLLSREQWDNNHVIRRCCSVGRFESLDSMKQ
DFRSAREVIGAEAVACDATTCCKTEYSLSTCKYQSPQNPSLVGIMQRWFRQEPWNPNARY
FLVLALFSKSRRTKFPRHLINVVKRMISTALINQLCLENIFNRYMKFQLLLCSSELTLRD
GDIPGCISYAKEASTLSLPDGYTFFAHLQLCRAHIAENNHTGLSEEFMECLKLKTHHPIG
WITLKTIESRNRPQNSVSYLDSGFRDGVIESKGSWNSWWAVYNFLCGLISQEAQNFKPAE
EFLAEACSLVTSESCFFLCHGIICLELAKTQHEPQYINLGIRSYKKALEVSSTGLPFINY
LIAQAEASLGSKAKWERSLCYEWSSWPPEMRPAELYFQMHLLGQHGSEPSSGRDAYGDPR
DWILRAIHLNPSCSRYWKILLKYVD
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggaactcactgaagaagacaatcaaaattcgttagaatttaatccagatgatccttct
caccaattcgaccttgggaagctgttgtgggaaagaggcgtagaatggagagagaaagca
gccgagcacttcttgaaggcagcaaaattgaatccgcaaagtggggaagcttttaaatac
ttaggtcattactacggcaatgtagatatccagagagctgtcaagtgttatcaacgggct
gtttcacttaaccccgatgattctgatgctggggaagcattgtgtaatttgttggacaaa
gacgggaaggagagtttggaggttgctttgtgtaaagaggcctcatctaagtcccctcgt
gcattctgggcgttttccaggatgggttgcctattggtccatcaaaagaagtggtctgag
gctgtccagagtctacagcatgctattcgaggctatccatctagtgcggatctctgggag
gctttaggcctttcttatcaacgacttggcatgtatactgctgccatcaagtcatatgca
cgagcaatggagttggaaagttcaagaacctttgcaatggttgagagtggaaatatttac
ctaatgcttggttggtatagaaagggaatagatcagtttcgagaggctcttgagatacgc
ccccaatgtacatctggtcaatatggacttgcttttgggctccttgctttgtcgaaagaa
tgcatcaagcagggtgcattttcatgggcctcgtctatgttggaggaagcgtctaaagtt
gcagaagcaagcacccatttggctagcaatatgtcatgtttgtggaagctgcacgctgat
attaagcttacatatgccaaatcatttccatggacaggagaggatcagaaggatgaggta
gccttttcaaactcactcctctcttggaaagaaactcgctattctgcagcgatgtctggc
aaacgttcctatcagcgtgctctccacttagctccatggcaagcaaatatttatatggat
attgctgtggccataaatcttattagttctttaaaagggagtcaacaagatgatctggac
gcctggaatccggctgagaagatgctgttgggaagcttattacttgagagtgacaattat
gaattttggatggcattgggatgcgtgtctggtcataaagcgttgagacagcattccttc
atccggggattgagattggatgtatctcttgcttctgcttgggcatatcttggaaagcta
tacaaagaagagggtgaaagccaattgggcagacaagcatttgacagggcacgtagtata
gatccttcccttgcgttgccgtgggctggcatgtcagctgaaatagttactagtgagtct
tcgtcagatgaggcttatgatagttgcttgcgcgctgttcaaatattgcctcttgctgaa
tttcaaattggtcttgccaagcttgcacgaatttctggtcacctattatcttcagaggtt
tttggagctatcaggcaagctgtgcagtgtgcaccgtcttatcccgagtctcataatata
tgtggtctggtttatgaagggcggcatgattatgagggcgctgttacttcttatcaacta
gcacgttgtgcatggaagatttctgcatttcctttacctcagtcttattttgctgatata
tctgtgaatctggctagagctctatgcaaggctgggaatgtgctggctgctgtgcgagaa
ttggaacatttgaaggaaagaggtttacttaacgttgaaggcctacaagtatatgctgta
gcattatggaaccttggcaagaacgatctggccttgtctgccgcgagagatctcgctaaa
tgtgttcctaccatcaatatgtcttcagcagctgcagccatttgtctaatttgtgctctt
ttgtactccatttctggggcaggatcagctactaatagtattttaaaaatgcctagagag
ctgctccagagtgcaaaagttagctttgttgtatctgcagtagatgtcgtcgatcagact
aatcaactacaggctgctgtctcgagtagtcgtggttccctttcatcacaagaagagata
attgaaatgcatcttttggttgcacttggtaaactaatcagaaatggatcagggcgtaac
ctcagtatacaaagagggattgaccacctcagaaaggcgttgcatatgtaccccaatgct
agttctttaagaaacatgctgggatatcttttgttatctcgtgaacaatgggataacaac
catgttataaggcggtgttgttctgtgggtcgttttgagtctcttgactctatgaagcag
gacttcagatctgcacgcgaagttattggcgctgaagcggttgcttgtgatgcgactacc
tgctgcaaaacagaatactctctttccacttgtaaataccagagcccccagaatccatct
ctagtaggaataatgcagagatggtttcggcaggagccgtggaaccctaatgctagatac
ttcctagtactcgcccttttttcaaaatcacgacgaacaaaatttccgcgacaccttatc
aatgtggtcaagcggatgatttctactgctctgatcaatcagttatgtttagagaacata
ttcaacagatatatgaagttccagctgcttctatgttcctcagaactcactcttcgtgat
ggagatattccagggtgtatttcttatgcaaaggaagcatcaactctttcacttcccgat
ggctatacctttttcgcccatttgcaattgtgtcgggctcatattgccgaaaataatcat
acaggtctcagtgaagagtttatggagtgtttgaagcttaaaacccatcatcctattggt
tggataactcttaaaactattgaatcgcgaaataggccccaaaatagcgtgtcttattta
gattcaggtttcagagatggtgtcatagagtccaagggatcatggaactcatggtgggct
gtctacaatttcttgtgtggattaatttctcaagaggctcagaacttcaagcctgcagag
gaattcctggctgaagcttgttcattagtgacgtctgagagctgtttctttttgtgccac
ggtatcatctgcttggagcttgcaaaaacacaacatgaacctcagtatataaatctcggt
ataaggagttataaaaaagcgctagaggtttcatcgaccggattgccattcattaattat
ttgattgctcaagcagaggcaagccttggatcaaaggcgaagtgggaaagaagtctttgc
tatgaatggtcctcttggccaccagagatgaggccggcagaactctatttccaaatgcat
ttgcttgggcaacatgggtctgaacccagttctggcagggacgcttatggcgacccgcgg
gattggattcttcgagctattcacctgaatccttcttgctcaaggtattggaaaatcctg
ttgaaatatgtagactaa
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