Silene latifolia (white campion): 141619296
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Entry
141619296 CDS
T11116
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
141619296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141619296
Enzymes [BR:
slaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
141619296
DNA repair and recombination proteins [BR:
slaf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
141619296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
TPGS1_C
Motif
Other DBs
NCBI-GeneID:
141619296
NCBI-ProteinID:
XP_074292424
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Position
X:complement(338732677..338736583)
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AA seq
1245 aa
AA seq
DB search
MAMVATTSELKFSVLVSFFDATKRVSGSAKKRATFRKFINTFCKPHDYFSAIRLILPSLD
RARGSYGLKEQMLGTSIVDALGMSRDSEDAKKLIGWRRGGSKVAGDSAGNFSAVAAVEVL
QRRQNSVSGGLTVSELNDLLDRLAAAEDRQGKSNVLGELIRKTNWQEMKWIIMIILKDLK
LGISEKIIFNEFHPDAEDLFNVTCDLRFVCEKLCDRKVRHKRQDIEVGKAVRPQLALRVM
SLAAAWKRFQGKEVVAECKFDGERIQIHKNGDVVRYFSRNFFSHTEYESGMNDVIVGNVL
SERCILDGELTVWDKGSNCFASFGANQSVAKSMREGRLDGDRHLCYVVYDLLYVEDTSVI
HQTLKERQELMRKFVRPVKGRLEVLLPSGEPCSSVIVKHVDEVERFFKEMVDNREEGVIL
KDLGSKWEPGDRGGKWIKLKPDYINAGSDLDVLIIGGYYGTGRRGGSVAQFLVGLAERSS
PNTYPRRFMSFCKVGTGLKDEELDELVMKLKPYFRKYEYPKKSPPSFYQVTNNSKERPDV
WVESPEKSIIVSITSDIRTIETDAFAAPYGLRFPRIDRVRYDKPWHECLDVQSFVELVQS
SNGTIQRGGDNEGTEVGKPKRTRKGEGRKKLSLTVPSHFARTDVSGVKGESSVFSKMVFH
FVNVPAGHSSGSLHTLVVENGGTFSMNLNDTVTHCIGAESKGIKYEAAKRRGRDVIHYSW
FLDCCSKKQLLPLRPNHFINLSDTSRKKLQEEIDEFSDSYFWDINVAELKQILCDVNTSK
DGKIIDYYKKKYCPRDKWCCFHGCRVYFHLVDKRPSSEWDVFLRVATRRMKVDVSVGGGK
VVENPSDATHIVVVSLPGRDPDFDTLLQSFPEDKKRLLRLKRIHVVRCQWLEDCFEKGQK
LPELVYNLKPDTMEESSSSDEECENDINKERLSASPVHEEPDPPKRSKTVAHVREPRRKR
GRPAAVIKPLKPKRARVGKRPAKLQEVASDDEFSEQERPIQPRVSAELDQIKPQRPKRNS
VRKRPAVLQEFESDDEFSDQEHHVQPRASRELGLKGKSAVKKTATTKRARGGKRAAKLLG
ISSDDENSEKDVRPESAMDGDVSPRSDPHEKSIMQEANTSEKYDSGTDSTVLGSKPVTLE
RNVEYKREEPKLRHDEIKHGLDNAEKSTELSTKLKSEETDDPAQAMLRNLIPSLGKTAQP
PTPVSEDEDLPTKTPKEGSSSAPKGETVKKKKVSYKDLVNQFLKN
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggtggcaacgacgagcgaattaaagttcagcgtactcgtctctttcttcgac
gccacaaaaagagtaagtggttccgccaaaaaacgcgcaacatttcgcaaattcatcaac
acgttctgcaaaccacacgattacttctccgcgattcgcctcatccttccttcgcttgat
cgcgcgcgtggaagttacggtctcaaggagcaaatgctcggaacctccattgttgacgcg
ctcggaatgtcacgtgactccgaggacgcgaaaaagttgattggttggcgaagaggaggt
tctaaagtcgccggagattccgccggaaacttctccgctgtcgccgccgtagaagttctt
caacgccggcagaattccgtctccggcggactcactgtcagcgaactgaacgatctcctc
gaccgcctcgcggcggcggaggatcgtcaaggtaagagtaatgttctcggcgaattaatt
cgcaaaaccaattggcaagagatgaagtggataattatgattatattgaaagatttgaaa
ttaggtattagtgagaaaatcatttttaatgaatttcatcctgatgctgaagatttattc
aatgttacttgtgatttacgctttgtttgtgagaaattgtgtgacaggaaggtgagacat
aagcggcaggatatcgaggttgggaaggcggtccggccgcagctggcattgcgtgttatg
agccttgctgcggcgtggaagcggtttcagggtaaggaggttgttgcagagtgtaagttt
gacggtgaaaggattcagattcataagaatggtgatgttgtgagatattttagtcggaat
ttctttagtcatactgaatatgaatctggtatgaatgatgtgattgttgggaatgtgttg
agtgaaaggtgtatacttgatggggaattgactgtttgggataaagggagtaattgtttt
gcgagttttggggcgaatcagagtgttgctaagtcgatgagggaaggacggttggatggt
gatagacatttgtgttatgttgtgtatgatttgttgtatgttgaggatacgagcgtgatt
catcagactttgaaagagcgacaggagttgatgaggaagtttgtgaggccggttaagggt
cggttggaagtgttgttgcctagtggggagccttgttcgtcagttattgtgaaacacgtg
gatgaagtcgagaggttttttaaggagatggttgataatagggaagagggagttattttg
aaggatcttgggtcgaagtgggagccgggagataggggtgggaagtggattaaattgaag
ccggattacattaatgctgggtctgatttagatgttttgatcattggcgggtattatggg
actggtcgtcgtggagggagtgtagcacagtttttggtgggtcttgcggagaggtcgtct
ccaaatacttatcctaggaggttcatgtctttctgtaaggttggtacaggtcttaaagac
gaggaacttgatgagttggtcatgaaattgaaaccgtattttagaaagtatgagtaccct
aagaagtcaccacctagcttttaccaagttacaaataactcgaaagaaagacctgatgtt
tgggtagaaagccctgagaagtcgattatcgtgtcaattactagtgatattcgtactata
gagactgatgcgtttgctgcaccttacggtttgaggtttcctagaatagaccgggtgagg
tatgacaagccttggcatgagtgccttgatgttcagtcttttgttgagttggtgcagtcg
agtaatgggacgatacaaagaggaggtgataatgaagggacggaagttggtaaaccgaaa
cgcacgagaaaaggtgaagggaggaagaaactctcccttaccgttccttctcattttgcc
cgcaccgatgtttctggcgtgaaaggagaatcgagcgtattctcaaaaatggtgtttcac
tttgtcaatgtgcccgctggtcattcctcgggttcactgcacactctagttgttgagaat
ggaggcactttctccatgaatttgaacgacacggtgactcattgtattggggcagagagt
aaagggatcaagtatgaggcagcaaaacgtcgaggccgtgatgtcatccactactcttgg
tttttagactgctgttcaaagaagcagcttctcccattaaggccgaatcactttatcaac
ctctcagatacttcaaggaagaagttacaggaagagattgatgaattctccgactcttac
ttttgggacattaatgttgcagagctgaagcaaattctgtgtgatgtaaatacgtcaaaa
gatggaaaaattatcgactattacaagaaaaagtattgtcctcgtgacaaatggtgctgt
ttccatggctgccgagtatatttccacctggttgacaagcgcccctcttctgaatgggat
gtttttctgagagttgccacgaggcgaatgaaagttgatgtttctgtcggaggggggaaa
gttgttgaaaacccgtctgatgctacgcatatagtagtcgtgtcattgccagggcgcgac
ccggattttgatactttgttgcagagtttcccagaagacaagaaacggcttttgcggttg
aaaaggattcatgttgttaggtgccaatggttggaggactgtttcgagaaagggcagaaa
ttgccggaattggtatataacctgaagcctgatacaatggaagaatcatcctcgagtgac
gaggaatgtgaaaatgatattaacaaggaaagactctcggcttctccggttcatgaagaa
cctgatcctcccaagagatcaaagacggttgctcatgttagagaacccagaagaaaacgt
gggagacccgctgctgttattaaaccgctgaaaccaaaaagagccagagttggtaaaagg
cctgctaaattgcaggaagttgcgtccgatgatgaattcagtgagcaagagcgtcccata
caaccgagagtgagcgctgaacttgaccaaatcaaacctcaaagaccaaaaagaaatagt
gttcgaaagaggcctgctgtattacaggaatttgagtctgatgacgaattcagtgaccaa
gagcatcatgtacaaccaagagcgagccgtgaacttggcctgaaaggaaaatcagccgtc
aagaaaactgcaacaaccaaaagggctagaggtggaaagagggctgctaaattactggga
atctcttctgatgatgagaatagcgagaaagacgttcgccctgaatctgccatggatggc
gatgtttctccgagaagcgaccctcatgagaagtctattatgcaagaggctaatacttcg
gagaaatatgattctggaacagatagtactgtactgggatcaaaaccagttactttggaa
aggaacgtggagtacaaacgagaagagccaaagctcagacatgacgagataaagcacggt
ttagacaatgcagaaaaaagcacggaattatcgactaaactgaaatcggaagaaactgat
gatccagctcaagctatgttacggaatttgattccgagccttggtaagacggctcaacct
ccaacccctgtttccgaagacgaggatttacccacaaaaactccgaaagagggcagttct
tcagcaccaaagggagaaacagttaagaagaagaaagttagttacaaagatcttgtaaac
cagtttcttaagaattag
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