Silene latifolia (white campion): 141646419
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Entry
141646419 CDS
T11116
Name
(RefSeq) exopolygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf00040
Pentose and glucuronate interconversions
slaf01100
Metabolic pathways
Module
slaf_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
141646419
Enzymes [BR:
slaf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
141646419
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
DUF6296
Motif
Other DBs
NCBI-GeneID:
141646419
NCBI-ProteinID:
XP_074310416
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All DBs
Position
3:complement(145862254..145868814)
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AA seq
427 aa
AA seq
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MGMIASCKWLVVLVIIFALSFDGSEAAVTPAKRVRVFDVTKYGAKGDGKPVYEDGDSINR
LPIMKAWSAACEYTKGPAKVLIPNGTFVVAQVWFNGPCKSHVTVELQGTIVPDPDISQFP
NAQLLFFQLIDGVTLTGSGFIDAKIRGPPKSQDPNRDIDFFNLMPLITFYNSTNAVVDGI
NCANPAAFHVLVVLSRNITIKNVRFDADFLAPQSDTSGVYISNSKQVTVSNSFIRTGDNC
INIAPGSDQVNITGLTCSAGQGISIGADPFHGRAKDLDVKNVTVKNCTFKETTYGVSIFP
RPQVHKTRVSNILFQDLLMDKVNHPIVIHQQMPPRHDNKTIQAKVKDVHIKSINGTTTSR
VGVTVSCNPKLPCEGIEVTDVHLKYVGKSSLGKVSSDFSSKCSNPQVLLEGKHDLLSCAS
SIVKLGI
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtatgatcgcaagttgcaaatggttggttgttttagttatcatctttgctctttcg
tttgatggtagtgaggcggcggtgacaccggcgaaaagggttagagttttcgacgtgaca
aaatatggtgccaagggagatggaaagcctgtctatgaggacggtgattcgataaataga
cttccgattatgaaagcatggtcagctgcatgcgaatacacaaaagggccagcaaaagtg
ttgatcccaaatggaacatttgttgtggctcaagtctggtttaacgggccatgcaaatct
cacgtaaccgttgagcttcaaggtacaattgttcctgacccggatatctcccaattccct
aatgcacagcttctcttttttcaattaatcgatggtgttactcttactggatccggattt
attgatgccaaaattcgcggtcctcccaagtctcaggaccctaacagagatatcgacttc
ttcaatctcatgcccttgattacgttttataattcaacaaatgccgtggtggatgggatc
aactgtgcgaaccctgctgcatttcatgtcttagttgtgttgagcagaaacataacaatt
aagaatgtgagatttgatgccgatttcttggctcctcaaagcgacactagtggtgtttat
atcagcaactcgaagcaagtgactgtgtctaatagctttattaggaccggtgataattgc
atcaatatcgctcctggttccgatcaagttaacattacaggacttacttgttcagctggc
caaggtattagtattggggctgatccgttccatggccgtgccaaggacttggacgtgaag
aatgtgacagtcaagaattgtacattcaaggagacaacatatggagttagtatattccct
cgtcctcaagttcataaaacccgagtttcaaacattttatttcaagatttgttaatggat
aaagtcaatcatcccattgtcattcaccaacaaatgcctcctagacatgataataagacg
attcaagcaaaggtgaaggatgtgcacatcaagagtataaacggtaccacaacttcaagg
gttggagtaaccgtctcatgcaacccaaagctcccttgtgaaggcattgaagttactgac
gttcatcttaagtatgtgggcaagtcctcactcggaaaggtctcttcggacttttcatcc
aaatgttccaatccccaagtgctccttgagggcaaacatgatttattaagttgtgctagt
tctattgtaaaacttggtatatag
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