Seriola lalandi dorsalis (Yellowtail amberjack): 111665646
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Entry
111665646 CDS
T06058
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04510
Focal adhesion
slal04512
ECM-receptor interaction
slal04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111665646
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111665646
09142 Cell motility
04820 Cytoskeleton in muscle cells
111665646
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
slal00535
]
111665646
Proteoglycans [BR:
slal00535
]
Extracellular matrix (ECM) proteoglycans
Others
111665646
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
111665646
NCBI-ProteinID:
XP_023276492
Ensembl:
ENSSLDG00000017752
UniProt:
A0A3B4XW13
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MALSGICRDSLLVLLLQIVLICSAQRGPVGPRGPTGPPGTAGVPGVDGIDGDRGEDSTVN
GGPGLDGDNGKDGVPGAPGLPGADGPVGPPGDPGSVGLMGSKGDPGARGPTGEPGVGPDG
LDGIPGTDGLPGELGKVGAPGARGKRGQVGSPGPAGPRGPPAVYQGEDLCPNACPSGLTG
YSGLPGMKGHKGVKGESGEPGRQGHKGEEGEQGGSGEVGAQGLPGPGGSRGLPGIMGSKG
DRGARGKPGDVGPRGIQGGPGDPGQRGAIGEAGPQGVMGERGPSGIRGVPGPKGEPGLPG
PDGREGIPGLPGSKGIPGKSGAPGDAGLQGLPGLPGTYGQKGQSGLKGVTGDPGVVGLMG
SSGKQGERGEQGEVGPVGPRGGPGERGERGPGGPLGSPGARGSKGDPGLPGLPGPAGYLG
QKGDRGAVGLDGSKGEQGPPGDEGTPGDRGELGDQGEAGEKGSTGPPGETGNKGPEGGRG
QQGKEGKVGQPGPRGMQGDMGVPGLPGAQGPAGKSPTDTHIKQVCMRVMQEQLAQLAASL
SRPESGIAGLPGPPGPPGPPGPSGENGFPGHTGSRGLPGLKGPPGLIGRKGLKGDQGDRG
DRGPTARGPKGEPGAPGLPGNSGRPAYGKDGREGQRGPRGVPGIPGVPGPPGTAGLNGYC
ESSQCVLPMVASPVSAKDSSMKGPSEM
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctctctccgggatctgtcgggactctttgctggtgcttttactgcaaatcgtgctg
atttgctctgctcagaggggcccagtcggtcccagaggccccacggggccaccaggaacc
gccggcgtgcccggagtggatggcattgatggcgacagaggagaagactccacagtgaac
ggcggaccaggtcttgatggcgataacggcaaagacggagtccctggagctccgggcctt
ccaggcgcagatgggcctgtcggacctcctggggatccaggctcggtgggtctaatgggg
tcaaagggggatcctggggcacgtggaccaactggagagcctggtgtgggacctgatggg
cttgatggtattcctggaacagacgggctgccaggtgaactgggcaaagtcggagcccct
ggagcgagaggcaaaaggggtcaagttggttctcctggtcctgctgggcctcggggacct
cctgctgtgtatcaaggcgaggacctgtgtcccaacgcctgcccctctggtctgactgga
tattctggtctccccggcatgaaaggccacaaaggggtaaagggtgaatcaggtgagcct
ggaagacaaggacacaagggagaggagggcgaacaaggagggtcgggagaagtcggagct
caaggactaccaggcccaggtggatcaagaggcctcccaggaataatgggctccaagggg
gacaggggagctcgaggaaagcctggtgatgtgggccctcggggaatccaaggaggccca
ggtgatccaggccaaagaggagccataggtgaggccgggccacagggagtgatgggggag
cgaggcccatcaggaatcagaggagtcccaggaccaaaaggagagcctggtctacctggc
ccagatggtcgtgagggaatacctgggctgccaggatccaagggtattccagggaaaagt
ggcgctccaggtgatgctggccttcagggacttcctggtttaccaggcacttacggccaa
aagggacaaagcggtttgaagggtgtcacaggtgatccaggagttgtaggactgatgggg
tcttcggggaaacaaggggagcgtggcgagcagggagaggtgggacctgttggacccaga
ggaggaccaggtgaacgaggagaacgaggacctggcgggcctctgggatcaccaggagcc
aggggaagcaaaggtgatccgggccttccaggacttcctggccctgctggttatcttggc
cagaaaggagacaggggtgcagtcggtcttgatgggtctaagggagagcagggaccccca
ggtgatgaaggaacaccaggagatagaggagaactgggtgaccaaggagaagcaggagag
aaaggatcgacaggcccaccaggagagacaggaaacaaaggacctgagggcggcagggga
cagcaagggaaagagggcaaggtgggccaaccgggaccacgcggcatgcagggcgacatg
ggggtaccaggcctcccaggagcacagggaccagcgggaaaatcacccacagatacgcac
atcaaacaagtctgcatgagggtaatgcaagagcagctggcccagctagcagccagcctg
agcaggcctgagtcaggtatcgctgggctgcccggtccccccggcccacctggacctcca
ggcccctccggggagaacggtttccccggacacaccggatcacgaggactacccggtctg
aagggtccgcctgggttaataggtcgcaaaggactcaaaggcgaccagggtgacagaggc
gacagaggacccacagcgagaggacccaaaggagaaccaggtgcccctggtctcccaggt
aactcgggccgaccggcttacggcaaagacggccgtgaaggacagcggggacctcgcggt
gttcccggtattcccggcgttcccgggcctcctggtaccgccggtctgaacggttactgt
gagtcgtcgcagtgcgtcctaccgatggtggcgtcaccggtttcagcgaaggactccagc
atgaagggccccagtgagatgtga
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