Seriola lalandi dorsalis (Yellowtail amberjack): 111667588
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Entry
111667588 CDS
T06058
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111667588 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slal03021
]
111667588 (polr1a)
Enzymes [BR:
slal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111667588 (polr1a)
Transcription machinery [BR:
slal03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
111667588 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
CDC45
HMG_box_2
Nop14
DUF720
Motif
Other DBs
NCBI-GeneID:
111667588
NCBI-ProteinID:
XP_023279102
Ensembl:
ENSSLDG00000024095
LinkDB
All DBs
Position
Unknown
AA seq
1692 aa
AA seq
DB search
MLFGKEVPWRRLEGMSFGMYSAEEIRKLSVKVITNSRFLDAVGNVAPNSLYDLALGPADN
KEVCSTCCQDFNSCPGHLGHVELPLPVYNPLFFDKLYLLIRGSCLACHMLTCPRAAIHLL
LNQLKLVDHGAMQEVYQIEQVLNQYLEENAKASGDEIEQVLKEFTDTVLGVNAEDSENTK
PIKHLVEKKSSLINDFWRIHMKTRKCPWCRSGRFAVRREHNTKLIITMPSGVQTSENTDE
DLVAGKRVYLTASTARDHTSKLWEKEGFFLKCLFSGLEEATASKEGEKGFYPDLFFLELL
VVPPSRYRPVNRLGDQMFTNGQTVNMQAVMKDCGIIRKLLALIAGEKNTQEEEEVAEQTD
QSFLSGIPGQTLTDKLYNIWIRLQSHVNIVFDSDMDKMMTEKYPGIRQILEKKDGLFRKH
MMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVH
PGASMVINEDGRRTILSASSLAQREAVAKQLLTPCPGPHKMPMKIVNRHIKNGDVLLLNR
QPTLHRPSIQAHSARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYMLV
STDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRDQYTELVYRGLTDKPGRVKLLP
PAILRPQQLWTGKQVVSTLLLNVIPQKAVPLNLVGKSKIPSKAWIQVPPRAAPGYRPDSM
CDSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLY
RGFTLGVEDILVKPGANKQRKKIIQKSLTIGTKALQAAFNLPSNVDQAEAQSRWQDAHLN
PDQRDFSMADHKFKEVANQVNNDINKVCMPIGLHTSFPDNNLQLMVQSGAKGSTVNTMQI
SCLLGQIELEGRRPPLMPSGKFLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFFHCMAGR
EGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFL
QPRQFPFIEDNYEVIQRSQGLDKVLARLDPQTASQHFAAIQRWKAKRENAGPRRGAFLLF
SQKKLAKLKQTEQTTQSDVNGRNAVMLQVAQQWHSLDEASRSKYSRKSSRCPEPSLGSFR
PDVCFGSVSENFHDITEKYLQNRGSTSKDTLDTHSLRQLLYYKWQRSLCDPGEAVGLLAA
QSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNTKKALK
RAKTLRKKLTRVCLAEVLQKVDVIESLRIENHQKLRTFKVAFHFLPPDRYSDDKLLSPQQ
ILHYMETRFFRLLLEAIKKRSAKLASIAVETRRATPRDKDLDGDGTADTAGLDDGEGEEE
RVIVDDQGNEGDADASDAKRKDKQEEEVDYESEEGDGGDDGDDKEDQGEEEEEKNEEQNT
QEESLPESAGVRPEGKKKRAKRREGEATLSQMRVNSVLESNPAIEKYCYDHQHELWCEVY
LVLPVSKVHFDLTSVLSTLAQNAVIMETKGLTRCLLSETTKKTGEKETVLNTEGINMHEL
FKYSDILDINRLYSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYM
CFEGVYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKVVKG
GTGLFELKQPLQ
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttggaaaagaagtgccatggaggcgtttggagggcatgtcgtttggcatgtac
tctgccgaagagataaggaagttgagtgtgaaagtgatcactaactcaaggttcctggat
gcagttgggaatgtggccccaaacagcctgtatgatctggcactgggaccagcagataac
aaagaggtgtgttccacttgctgtcaggacttcaacagttgtccaggacacctggggcat
gtggagctacctctacctgtgtacaacccactgttctttgataaactctacctgttgatt
cgtggttcctgtctggcgtgtcacatgttaacgtgtccccgagctgccatccacctgctg
ctaaaccagcttaagttagtggaccatggtgccatgcaggaggtctaccagatagagcaa
gttctcaaccagtacttggaggagaatgccaaagcctctggagatgagattgagcaggtg
cttaaggagtttacagacacagtactcggagtgaacgctgaagattcagagaacaccaaa
ccaattaaacatctcgttgaaaagaagagcagtctgataaatgacttctggaggatccac
atgaaaactaggaaatgtccgtggtgcaggagtggcagatttgcagtgcgtcgtgagcac
aacaccaagctgattatcacaatgccgtcaggagtacagaccagtgaaaatactgatgaa
gatctggtggctgggaagagagtctacctgaccgctagtactgccagagaccacaccagc
aaactgtgggagaaagaaggtttcttcctgaagtgtctgttctctgggcttgaggaggcc
acggcatcaaaggagggagagaaaggtttctatcctgacctcttcttcctggagctgctg
gtggtcccaccttccaggtatcgtccagtcaatcgactgggtgaccagatgttcactaat
ggtcagacagtcaacatgcaggctgtcatgaaggactgtggaatcataagaaaacttctg
gctctgatagccggtgagaaaaacactcaggaagaagaagaggttgctgaacagacagac
cagtcgttcctgtcggggatccctgggcagacattaacagataaactctacaacatctgg
atccgactgcagagccatgtcaacatcgtctttgacagtgacatggacaaaatgatgaca
gaaaaataccctggaatcagacagatcttggagaagaaggacggattgttccggaaacat
atgatgggcaaacgagtggactatgctgcacgatctgtcatttgtccagacatgtacata
gggaccaacgagataggaatacctatggtgtttgccaccaagctgacctaccctcagcct
gtcactccgtggaatgtaaaggagctccgccaggccgttcttaacggaccgaacgtccac
cccggggcttccatggtgataaacgaggatggcaggagaaccatcttatcggcttccagc
ctcgcgcagagagaagcggttgccaagcaactgctgacgccctgtcctggtccccataag
atgccaatgaagatagtgaatcgtcatataaagaatggagatgttttgttactgaacaga
caaccaactctgcacagaccctccatacaagctcattctgcccgcatcctcccaggagag
aaggttttaaggctccactatgccaactgcaaggcatacaatgctgactttgatggagac
gagatgaatgctcacttccctcagagtgagctgggcagagcggaggcctacatgctagtc
agcactgaccagcagtacctcgtccccaaggatggtaaacctttagcagggctgatccag
gaccatatggtgtcagggacgagaatgacgatacgaggctgtttcttcacccgagaccag
tacactgagttggtgtacagaggactgaccgacaaaccaggcagagttaaactgctgcca
ccggccatactccgaccacagcagctgtggacaggaaagcaggtggtgtctacgctcctg
ctgaatgttatcccacagaaagcagtgcctctcaacctggttggcaaatcaaaaatcccc
agcaaagcgtggatccaggtcccacctcgtgctgctccgggatacagacctgacagcatg
tgtgactcacaggtggtgattcgccagggggagctgttggtgggggttttggacaaagct
cactatggctcctcagcctacggtctggtccactgctgctatgagctgtacggaggagag
accagcggcaaactgctcagctgtctggctcgactcttcactgcctacttgcagctatac
agaggcttcactctgggtgtggaggacattctggtgaaaccgggtgccaataagcagagg
aagaaaatcattcaaaaatcactaacgatcggcaccaaagccctccaagcagccttcaac
ctgccctccaacgtggatcaagctgaggctcagagccgctggcaggacgctcacctcaac
ccagaccagagagacttcagcatggctgaccacaagttcaaagaagtggccaaccaagtg
aacaatgacatcaacaaggtgtgtatgcccatcggactccacacatcgttcccagacaac
aaccttcagctgatggtccaatcaggtgccaagggatctactgttaacaccatgcagatt
tcgtgtctactaggtcagatcgagttggagggccgtaggcctccactgatgccctctggg
aaattcttgccgtgcttccaaccgtatgaccctgcacctggtgctggaggctttgtctct
ggaagattcctcacaggcatcaaaccacaggagtttttcttccactgtatggctggcaga
gaaggactggtcgacacagctgtgaaaacctctagatcaggatacctgcaaagatgtgtc
ataaagcatctggagggtttggtagtgcagtatgatctaacagtgagagacagcgatgga
tctgtggtccagttcctgtacggtgaagatgggctggatatccccaagactcagttcctg
cagccaagacaattccccttcatagaggacaactatgaggtcatccagaggtcccagggc
ctggacaaggttttggcacgtttggaccctcagaccgccagtcaacactttgcagccatc
cagcgctggaaagcaaagagagagaatgcaggtccacggagaggagcgttcctgttgttt
tcccagaagaagttggccaaactaaaacagactgaacaaacaacacagtcagatgtcaat
ggcagaaatgctgtcatgctgcaggttgcacaacagtggcactctctggatgaagctagc
agatcaaaatacagcaggaagtcctctcgctgccctgagccctcgctcggctcgtttagg
ccagatgtctgcttcggatcagtgtctgaaaacttccatgacatcacagagaaatatctg
cagaacagaggcagtacgagtaaagacacgctagacacccacagccttcgccagctgttg
tactataaatggcagcgttcactgtgtgatccaggtgaagcggtgggtctgctggcagct
cagtccataggtgagccctccacgcagatgaccctcaacaccttccactttgctggcaga
ggagagatgaacgtcactttgggaataccccgactaagagagatcctgatggtggccagc
tccaacattaaaactcccatgatgagcgttccagtactgaacaccaagaaagccttgaag
agggccaagacgctccgtaagaaactcaccagggtgtgtctggctgaggtcttacagaaa
gtggatgtgatagaatcactgaggattgaaaatcaccaaaagctgcgcactttcaaagtc
gccttccacttcctgcctcctgaccgctactctgatgataagctactgtcgccccaacag
atcctccactacatggaaacaaggtttttccgtctcctcctggaggctatcaaaaagcgc
agcgccaagctggcctccatcgccgtggagacgaggagggccacccctagagataaagac
ctcgacggcgatggaacggctgacaccgcagggttagatgacggggaaggagaagaggag
agagtgattgttgatgaccaggggaacgaaggagacgcagacgcctcagatgccaagaga
aaagacaaacaggaagaggaggtggattatgagagtgaagagggggatggaggtgatgac
ggcgatgataaagaagatcagggggaggaagaggaggagaagaatgaggagcagaacact
caggaagagtccctgccagagtctgcaggagtgagaccggaggggaagaagaaacgagca
aagcgaagggaaggagaagcgaccttgagtcagatgagagtcaactctgttctggagtcc
aacccggcgatagagaaatactgctacgatcatcagcatgaactctggtgtgaggtttat
cttgtgttaccggtcagcaaggtgcacttcgacctgacctcagtactgtcaacactggcc
cagaacgccgtcatcatggaaaccaaaggcctgactcgctgcctgctgagtgaaactaca
aaaaagactggagaaaaagagacggtcctcaacacagagggcatcaacatgcacgaattg
ttcaagtacagtgatatcttagacatcaacaggctgtactccaatgaggtccatgccatg
gctaacacctatgggattgaagtggctctgaaggtcatagagaaggagatcaaagatgtc
tttgctgtctatggaatcgaggttgaccccagacatctgtctcttgtagcagactacatg
tgttttgaaggtgtatataagcccttaaaccgacatgccatcaggtccaactcctccccg
ctgcagcagatgaccttcgagaccagttataaattcctcaaacaggcaaccatgctgggg
tcacacgatcagctggtgtcaccctcagcctgcctggtggtggggaaagttgtcaaaggt
ggaacagggctgtttgaactcaaacaacctctacagtag
DBGET
integrated database retrieval system
