Sugiyamaella lignohabitans: AWJ20_2730
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Entry
AWJ20_2730 CDS
T05270
Symbol
SKI3
Name
(RefSeq) SKI complex subunit tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWJ20_2730 (SKI3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_2730 (SKI3)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
AWJ20_2730 (SKI3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_2
TPR_1
TPR_17
TPR_14
TPR_CcmH_CycH
TPR_22
TPR_12
TPR_16
TPR_8
TPR_9
ANAPC3
TPR_11
ARM_TT21_N
TPR_7
TPR_Slam
ARM_TT21_5th
TPR_15
HAT_PRP39_C
TPR-S
HAT_Syf1_CNRKL1_N
Coatomer_E
TPR_EMC2
Fis1_TPR_N
Motif
Other DBs
NCBI-GeneID:
30034674
NCBI-ProteinID:
XP_018737587
UniProt:
A0A161HGZ1
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All DBs
Position
B:complement(2311208..2315035)
Genome browser
AA seq
1275 aa
AA seq
DB search
MQLPDNELYDFMTGTFLKPEVTLTRLIKISESEENEKINKTVAKNRFRVPTGPRASAAAG
GNSDAAKYTILSQSMLPRLYQDLMNISNDDDLRRLTEVKLLKHKYQLLKLSPKKAEKENI
LNEVQEMASGMVIVDSPDPTPWRVSIDWQDVKEFKDLDLSVVSMFVEKFPREGLAKVLDG
FLHSEISPFTSAQMKNLDEKKETATDKQHDKKKGKQKIRIAIKDDPETAKLLQSEGVDVE
DEDAPTNGQNDPEIEKEAVWKPAEVLEAMAEGFASDQDSILCYRILGAFYLRLQEYETAV
DIAQRGLEAVKKAALTTTKLFPNGKDNLSLILGTAYIYYQAPKNYDIAIKVFDFVLKHDS
KNIEASIGKGLILREKRQFKPAIKLLKSVIEQSPTNFQALFEYSWCLVLIGEREQGRKLL
EKCLEMMTGSDPLSVDYRAQIWWRIGSSLWDYKRETKDNDKDSPAKDASLSTQTQEAFKA
FVQSLQENPNYAPAYTSLGFFYSKVLKDTGRSSKCFYKAFEIDGGELDAAYQLATEFAEK
GEWELVEVIASRVVESDRLRTYSGRESSWPYRALGIVGLNQRDYAKTVQYFQKSLRITPK
DSHTWLGLGEAYANSGRYVAAAKAYERAKALDPDNRAIQYQYALVLREMQEFDKALTELR
EIGNLNLTEFPVGSALLETYILSAKYSLENDFYGDAVRRAIGAIDVASEEKALLLDEGKS
VSTSFLWKGVGDACEVFLTVESKLGDIPLDKLTTLFGDEISVESNVRTTIIACMIKALQN
SSETAPTAAKGLAAHNLGLAYLKAHHFEPTEDYLHESISCFKKAIQTEPRNTEFWNAYGI
ASHSLNARVSQHCFIRSLGLNPRQPRTWSNLALLYMAQGDLELASEAIDKAQAVDPDFVV
SWVCQAVIDATLGNTKKANNLFEHSYTISKGNDGLAKFLYGLSVLESSKTPELGAKGKAI
ELDTGVLALQKYLLLSPDSYLGLTVQGMLLERTAGFTDGIKYLEALCKKVEADYDQGESE
NDLVKYARAKTQLARLRLGAHQFNEAVEDAQTVLQLLNESPEYSTLLLSSSLVAGIGLYF
CDQFGEAIEYFKTALEVSGENQDVVILLVQVLWANGGDEEREVALEQLYSSIGNKGSSVK
MTLLLGVIGLLNDPELLDAAGDELQQLSLDDLVKDRDNSVQEILSMIQKSNAPWQKALYM
WPSRYGILKNINLQLAVKTAESLNSLKHAQSINAEELSVAYNKADGSIQAAQRAVFYSPW
TVSSWDGLKEVLEQA
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atgcaactcccagataatgaactgtatgactttatgactggtactttcttgaaaccggaa
gttaccttgacacgactcatcaaaatttcagaatctgaagaaaatgaaaaaattaacaag
accgtggcaaagaatagatttagagtacctactggcccaagggccagtgctgctgctggt
ggtaacagcgacgctgccaaatacactatccttagtcaatcaatgctgcctagattgtac
caagatttaatgaatatttcgaatgatgatgatctgcgtcgactgactgaagtcaagctt
ttgaaacataaatatcagctgttgaagttatcaccaaaaaaggcagagaaggagaatatc
ctgaatgaggtgcaggagatggctagtggtatggtaattgtcgactcacccgacccaaca
ccctggagagtcagcatcgactggcaggatgttaaagaattcaaggatctagatttatca
gtcgttagcatgtttgtcgagaaatttcctagagaaggtttggcgaaagttctagacggc
tttttacactctgaaatttcaccctttacttcagcccaaatgaaaaacctagatgagaag
aaagagacggcgactgacaaacagcatgacaaaaagaaaggaaaacagaaaattcgtatt
gcaattaaagatgatccagaaacagccaaattgctacagagtgaaggtgtagacgttgag
gatgaagatgcacccaccaatggccaaaatgatcctgagatcgagaaagaagctgtatgg
aagcctgccgaagtactggaagctatggccgaaggatttgcctccgatcaagactctatt
ctttgttaccgaattctgggtgccttttaccttcgtcttcaagaatatgagaccgcagtc
gatattgcgcaacgtggtctggaagcagtaaaaaaggctgcactgactacaacaaagctc
ttccccaatggaaaagataatctgtctttgattcttggtactgcttacatttactaccaa
gcaccaaagaactatgatattgcaatcaaggtttttgactttgtacttaagcatgactct
aaaaatattgaagccagcatcggtaaggggttgattcttcgtgaaaagcgacagttcaag
cctgctattaaactgctgaaatccgtcatcgagcagagtccaactaatttccaggctctc
ttcgagtactcctggtgcttggttttaattggtgaacgtgaacaaggtagaaaactactg
gaaaaatgccttgaaatgatgacagggagcgatccattatctgtggactacagagcacaa
atttggtggagaataggttcgagtttatgggattacaaacgagagactaaggacaatgac
aaagattcgccggccaaggatgcgtcgctctcaacccagactcaagaagccttcaaggca
tttgttcaatcattacaggagaatccaaactacgctcctgcatatacatcgcttgggttc
ttttactcaaaggtgctcaaagacactggcaggtcatccaagtgtttttataaagcattt
gagattgacggtggtgaactagatgcagcatatcaattggctaccgaatttgcagaaaaa
ggagagtgggagttggtcgaagtcattgccagtagagtagttgaatcagatagactccgt
acatatagtggcagagagtctagctggccatatagagcattaggcatagttggactaaat
cagagggattatgccaaaacagttcaatatttccaaaaatcccttagaattacacccaaa
gattcacacacctggctaggattgggagaagcatatgcgaacagtggaagatacgttgct
gctgccaaggcatacgagagagctaaggctctagatccagacaacagggccattcagtat
cagtatgcattggttttgcgggagatgcaggaatttgacaaagctctaaccgaacttcga
gagattggaaatttaaatttaaccgagtttccggtcggatcggcactgttggagacgtat
attctctcagccaagtacagccttgaaaatgatttctatggagatgctgtacgaagggct
ataggggctattgatgttgcttcagaggaaaaggcgttactccttgatgagggaaaatct
gtgtctacttcatttctgtggaaaggcgtcggagatgcctgtgaagtgtttttgactgtc
gagtccaagctgggtgatatacctctagacaagctgacaacgcttttcggtgatgaaatt
tcggtcgagtcaaacgttcgcacaactatcattgcatgcatgatcaaggccctgcagaat
tcttcagaaactgctcccactgccgcaaagggccttgctgcacataacctgggtcttgct
tatttaaaagcgcatcattttgaacccactgaagattaccttcatgagtccatctcgtgc
tttaaaaaggcgattcaaactgaaccgcgaaataccgaattctggaatgcttatggaatt
gcatctcactcactaaacgcaagagtttctcaacactgtttcatcagatcgcttggtctg
aaccccagacaacctagaacttggtcaaatcttgctcttctatatatggcccaaggtgat
cttgagttagcatctgaagcaatagacaaagctcaagcggttgaccctgattttgtagtg
tcatgggtctgtcaggctgttattgatgctacccttggtaacaccaaaaaggcaaataat
ctctttgaacactcatacacaatttctaagggtaacgatgggcttgctaaatttctctat
ggactttctgtactggaaagttccaaaactcctgagcttggcgcgaaagggaaggcgatt
gagcttgatacaggtgtattggcacttcagaagtacctattactctcgccagattcttat
cttggtttgactgtacaaggaatgcttttggaacgaactgcagggtttaccgacggtatt
aagtatttagaggcattgtgtaaaaaggttgaggcagattatgatcagggagagtctgaa
aacgatttggttaaatacgcaagggccaaaacacaattagcaagactgcggctgggagct
caccaattcaacgaagcagtggaagatgcacaaacagttcttcaattgttaaatgagtcg
ccagaatattcaactctcctgttatcgagtagtttggttgccggaatcggtctatacttc
tgcgaccaattcggggaggcaattgagtatttcaagactgctcttgaagtttcaggagaa
aaccaggatgttgtcatcctgttggtacaggttttatgggccaatggtggtgacgaagaa
cgtgaggtggccctcgaacaactttattccagcatcggaaacaagggttcatcagtgaag
atgactcttctcttgggtgtgattggactgttgaacgatcccgagctcttggatgctgct
ggtgatgagcttcaacaactatctctggatgatcttgttaaagaccgtgataacagtgtg
caggagattttatcaatgattcagaaatcaaatgctccttggcaaaaggctctatatatg
tggccctcacgttatggtattctgaagaatatcaacttacaactcgcagtaaaaactgcc
gagtcgcttaattctctcaaacatgctcaatcgataaatgccgaggagctgagcgtggca
tataacaaagccgatggtagtatacaggcggcacagagagctgtattctactcgccttgg
acagtttctagctgggacggcctaaaagaggtcttagaacaagcatag
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