Sodalis ligni: GTU79_00475
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Entry
GTU79_00475 CDS
T08321
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K02584
Nif-specific regulatory protein
Organism
slig
Sodalis ligni
Pathway
slig02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
slig00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GTU79_00475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slig03000
]
GTU79_00475
Transcription factors [BR:
slig03000
]
Prokaryotic type
Helix-turn-helix
Other families
GTU79_00475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
Mg_chelatase
AAA_16
AAA
AAA_5
Parvo_NS1
AAA_22
AAA_7
HTH_28
TIP49
Motif
Other DBs
NCBI-ProteinID:
QWA11354
LinkDB
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Position
104787..105959
Genome browser
AA seq
390 aa
AA seq
DB search
MSTQTDLVKTGEQDRISVPRFNPAPGRPVHGRSRKPHSRHEVDHIIARSPAMKNIMAILA
RIAPTRTAVLLRGEPGTGKDVIARAIHNLSPNREGPFIKVCCDYLNNEQTLLELFGCDSG
YSPGAARYPGDISLAAGGTLFISEIGHFSLALQKRLLRMLQDQLYRPLGSTETLPSDVRI
ICATEKNLEAMMVRGEFLPELYYRIHIATVNLPPLRDRKEDIPALAAYFFERYNRVNGLR
LSITEAALAPLYVCHWPGNVRDLENCLEHAALLAADDVIRQLPCLAGRCFRQRLNQKISR
QEEVPPAHESNDGVLAPAAAWRPVTPAGQGTLSPPAHDAALVDEDDPRNRLISALEKSGG
VKAKAARLLNITPRQLYYALKKLQIEVKKF
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgagtacacagaccgatctcgttaaaaccggcgagcaggaccggatatccgtcccgcga
ttcaatcccgccccgggccggccggtccacggccggtcccgcaagccccactccaggcac
gaggtggaccacatcatcgcacgctcccccgccatgaaaaatatcatggcgatcctcgcg
cgcatagcgccgacccgcacggcggtgctgctgcgcggcgagcccggcaccggcaaggac
gtcattgcccgggcgatacataatctgtcgccgaaccgcgaagggccttttatcaaagtc
tgctgcgactaccttaataatgaacagaccctgctggagctgttcggctgcgattccggc
tattctcccggcgccgcccgctaccccggcgatatctccctggcggcgggcggcacgctg
tttatcagcgaaatcggccatttttccctggcgttgcaaaaaaggctgctgcgaatgttg
caggaccagctctatcggcccttggggagcaccgaaaccttgccaagcgacgtgcggatt
atctgcgccacggaaaaaaacctggaagcaatgatggtgcggggggaatttttgccggag
ctctattaccggatccatatcgccaccgttaacctgccgccgctgcgggacagaaaagaa
gacatccccgccctggcggcctatttttttgaacgctacaaccgggttaacggcctgcgg
ctctccatcaccgaggcggcgttggcgccgctgtatgtatgccactggcccggtaatgtc
cgggatctggagaattgcctggaacatgccgccctgttggccgcagacgatgtaatccgc
caactgccctgcctggcgggacggtgctttcgccagcggctgaaccagaaaatcagccgg
caggaagaggtaccgccggcccatgaaagcaacgacggcgttcttgcaccggcggccgcc
tggcggcccgtaacccccgcaggccaaggcaccctatcccccccggcccacgacgccgcc
ttagtggacgaggacgacccccgtaaccggttaatcagcgcgctggaaaaaagcggcggc
gtcaaagccaaagcggcccggttgcttaacatcacaccccgccagctctattacgccctc
aaaaaactgcaaatagaagtcaagaaattctag
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