Streptococcus lingualis: SM123_10020
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Entry
SM123_10020 CDS
T10630
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
slin Streptococcus lingualis
Pathway
slin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SM123_10020 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slin03021
]
SM123_10020 (rpoB)
03400 DNA repair and recombination proteins [BR:
slin03400
]
SM123_10020 (rpoB)
Enzymes [BR:
slin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SM123_10020 (rpoB)
Transcription machinery [BR:
slin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SM123_10020 (rpoB)
DNA repair and recombination proteins [BR:
slin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SM123_10020 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WPS46884
UniProt:
A0ABZ0SVV8
LinkDB
All DBs
Position
complement(2070663..2074232)
Genome browser
AA seq
1189 aa
AA seq
DB search
MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFLDHGLKEVFEDVLPISNFTD
TMELEFVGYEIREPKYSLEEARIHDASYSAPIFVTFRLVNKETGEIKTQEVFFGDFPIMT
EMGTFIINGGERIIVSQLVRSPGVYFNDKVDKNGKVGYGSTVIPNRGAWLELETDSKDIA
YTRIDRTRKIPFTTLVRALGFSGDDEIIDIFGDSELVRNTIEKDIHKNPMDSRTDEALKE
IYERLRPGERKTAESSRSLLVARFFDPRRYDLAPVGRYKINKKLNIKNRLLNQTIAEPLV
DAETGEILVEAGTVMTRDVIDSISEQLDNGLNKITYIPNDAAVLTEPVELQKFKVVAPTD
PDRVVTIIGNANPSDKVRIVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELL
ANQVRLGLSRMERNVRERMSVQDNDVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHNP
LSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGH
LNKYGFIQTPYRKVDREKGVVTNEIVWLTADEEDEYIVAQANSKLNEKGGFAEPIVMGRH
RGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKAP
YVGTGMEYQAAHDSGAAVIAQHDGKVTYADADKVEVRREDGSLDVYHVQKFRRSNSGTAY
NQRTLVKVGETVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKE
DVYTSVHLEEFESETRDTKLGPEEITREIPNVGEDALRDLDETGIIRIGAEVKEGDILVG
KVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRANGDELQSG
VNMLVRVYIAQKRKIRVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPS
RMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVKEAGMDSDAKTILYDGRTGE
PFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFGEMEVWALE
AYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRV
LDEDDQEVELRDLDEGEDDDVIHVDDLEKAREKAAKEAKAAFDAEESEK
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgacgttcaatacgggaaacatcggacccgtcgtagtttttcaagaatc
aaagaggttcttgatttaccaaacttgattgaaatccagacagactcattcaaagatttc
ttggatcatggcttgaaggaagtatttgaagatgtgcttcccatctcaaacttcacggat
acaatggaattggaatttgtgggttatgaaatccgcgaacctaagtattcgcttgaagaa
gcgcgcatccacgatgccagctactcagcaccaatctttgtgaccttccgtttggtcaac
aaagaaacaggtgaaatcaagacccaagaagttttctttggtgatttcccaatcatgact
gaaatgggaacctttatcatcaatggtggagaacggattatcgtatctcagttggtccgc
tcaccaggtgtctacttcaatgataaggtggacaagaatggtaaggttggttatggatca
actgttatccctaaccgtggggcttggttagagcttgaaaccgactcaaaagacattgct
tacacacgtatcgaccgcacacgtaagattccatttacaactcttgtgcgtgctcttgga
ttctctggagatgatgaaatcatcgatatctttggggatagcgaattggttcgtaatacc
attgaaaaagatatccacaaaaatccaatggattcacggacagatgaagccctcaaagaa
atctacgagcgtcttcgtccgggtgaacgaaaaacagcggaaagctcacgcagcttgttg
gtagctcgtttctttgatccacgtcgttatgacttggctcctgtcggtcgctacaagatc
aacaagaaactcaatatcaagaaccgcttgttgaaccaaacaatcgcagaaccattggta
gatgctgaaacaggggaaatccttgtagaagctggtactgtcatgacgcgcgatgtgatc
gacagcatctctgaacaattggataacggtttgaacaaaatcacctacattccaaatgat
gctgctgttttgacagaaccagtagaattgcaaaaattcaaagttgtcgctccaacagat
ccagaccgcgttgtcaccatcatcggaaatgccaacccatctgacaaagtacggattgta
actccagcagatatcttggcagagatgagctatttcttgaaccttgcagaaggtcttggc
cgcgtggatgatatcgaccaccttggaaaccgtcggattcgtgccgttggtgaattgctt
gccaaccaagtgcgtcttggactttcacggatggaacgaaacgttcgcgaacggatgtct
gtacaagataacgatgtcttgacaccacaacaaattattaacattcgtcccgtaactgca
gcaattaaagaattctttggttcttcacagttgtcacagttcatggaccaacacaaccca
ctttctgagttgtctcacaaacgtcgtttgtctgccttagggcctggtggtttgacacgt
gaccgtgccggatatgaagtgcgtgacgtgcactatacccactatggtcggatgtgtcca
atcgaaacacctgaaggaccaaacatcggtttgatcaacaacttgtcatcttatggacac
ttgaacaagtatggtttcatccaaacgccataccgtaaggtagaccgtgaaaaaggtgta
gtgaccaacgaaatcgtttggttgacagccgatgaagaagatgagtacatcgtcgctcag
gccaattctaagttgaacgaaaagggtggctttgctgagccaatcgttatgggacgtcac
cgtggtaacaaccaagagttcccatctgatcaagtcgactacatggacgtatctccaaaa
caagtagttgctgttgcgacagcatgtattcctttcttggaaaacgatgactccaaccgt
gccctcatgggtgccaacatgcaacgtcaggctgttccattgattgatccaaaagcccct
tatgtgggtactggtatggaataccaagcagcccatgactcaggagctgcagtcattgct
caacatgatggtaaagttacctatgcagatgcggataaggtggaagtccgtcgggaagat
ggttctttggacgtctaccatgttcaaaaattccgtcgttcaaactccggtacagcttac
aaccaacgtactctggttaaagttggtgaaaccgttgaaaaaggcgactttatcgctgat
ggtccatcgatggaaaaaggggaaatggcccttggtcaaaacccaatcgtcgcttacatg
acttgggaagggtataacttcgaggatgctgttatcatgagcgaacgcttggtgaaagaa
gatgtctacacatctgttcacttggaagaattcgaatcagaaacacgcgataccaagtta
ggccctgaagaaattacccgtgaaattccaaacgtcggggaagatgctcttcgtgacttg
gatgaaacaggtattatccgtattggtgctgaggttaaagaaggcgatatccttgtcggt
aaggtaacaccgaaaggtgaaaaagacctttctgccgaagaacgtctccttcacgctatc
tttggggataaatctcgtgaagtgcgtgatacatcactccgtgtacctcacggtggagat
ggagtcgttcgcgatgttaagatctttacccgtgcaaacggtgatgaattacaatctggt
gtcaacatgttggttcgtgtttacattgcacaaaaacgtaagatccgcgtcggagataag
atggccggtcgtcacggaaacaaaggggttgtgtctcgtattgttccagttgaagatatg
ccttaccttccagacggtacaccggttgatatcatgttgaaccctcttggggtgccatca
cgtatgaatatcggtcaggttatggaacttcaccttggtatggcagctcgtaacttgggt
attcacatcgcgacaccagtctttgatggagcaagctcagaagacctctgggatactgtg
aaagaagctggtatggatagcgatgctaagacgattctttacgatggacgtacaggtgag
ccgtttgacaaccgtgtctctgtcggtgtcatgtacatgatcaagcttcaccacatggtt
gatgataaactccatgcccgttcagtcggaccatactcaatggttacccaacaaccactc
ggagggaaagctcagtttggtggacaacgtttcggggaaatggaagtgtgggcccttgag
gcttatggtgcgtcaaatgtccttcaagaaatcttgacttacaagtcagacgatgtcaac
ggacgtctgaaggcctatgaagcgattaccaaaggtaaaccaattccaaaaccaggtgta
ccagaatccttccgcgttcttgtcaaagaattgcaatcacttggtcttgacatgcgtgtc
ttggacgaagatgatcaagaagtggaacttcgtgaccttgatgaaggagaagacgatgat
gtgattcatgtggatgaccttgaaaaagcacgtgaaaaagcagcaaaggaagcaaaagca
gcctttgatgccgaagaatcagaaaaataa
DBGET
integrated database retrieval system
