Simiduia litorea: R50072_04710
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Entry
R50072_04710 CDS
T10759
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
slio Simiduia litorea
Pathway
slio03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slio00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R50072_04710 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slio03021
]
R50072_04710 (rpoB)
03400 DNA repair and recombination proteins [BR:
slio03400
]
R50072_04710 (rpoB)
Enzymes [BR:
slio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R50072_04710 (rpoB)
Transcription machinery [BR:
slio03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R50072_04710 (rpoB)
DNA repair and recombination proteins [BR:
slio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R50072_04710 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
NQRA_2nd
RickCE_cat
Motif
Other DBs
NCBI-ProteinID:
BFM10318
LinkDB
All DBs
Position
548298..552383
Genome browser
AA seq
1361 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPSVMDVPYLLAIQLDSYRKFTQADASADARTDFGLHAAFKSV
FPIVSYSGNAALEYVSYALGKAAFDVNECILRGVTYAAPLRVKVRLIIYDKESANKSIKD
IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFTARV
IPYRGSWLDFEFDPKDLVFVRIDRRRKLPATILLRALGFTSEQMLDMFFDTSKFAINKDG
EFVLELVPSRLRGDVATFDIKDKKGKVLIEEGRRITARHIRDLEKAGITDLVVPNSYLVG
KALAKDIVDEKTGELLLECNTEITDEVLETLREANVNEIETLYTNDIDCGPFVSDTLRVD
PTRSPLEALVEIYRMMRPGEPPTKESAETLFQNLFFSQERYDLSAVGRMKFNRRLSREDE
TGEGVLSNDDIVDVMRTLIAIRNGQGVVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERA
VKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNDYGFLESPYRKV
KDGQVTDEIEYLSAINEAEQVIAQASAVVDKNGKLTEELVSVRYSNEFTLKAPGDVTYMD
VSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKAEKPLVGTGMERHVAVDSGV
CVVAKRGGVVDRVDASRIVIKVNDGEVDTGDAGVDIYNLTKYTRSNQNTCINQRAIVKTG
DVIARGDVLADGPSVDMGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ
ELTCIARDTKLGSEEITADIPNVGESALAKLDESGIVYIGAEVGAGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVGTGTRGTVIDVQVFTRDGIEKDQRSREIEKSQLD
KVRKDLNEEYRIMENATFERLRAALVGQKVSSGKNVKKGEVLTDDILNELPYEQWYKLRM
AEDALNEQLDAAEAGLIERRKILDERFEDKKRKLETGDDLSPGVLKIVKVYLAIKRRIQP
GDKMAGRHGNKGVISVIMPVEDMPYDEFGQPVDIVLNPLGVPSRMNVGQVLEMHLGMAAK
GLGDKINVMLEEQRKIADVRKFLDEVYNKTGDALAKADLTKFTDEEVLELAGNLRNGVPM
ATPVFDGAKETEIKALLRLADLSDTGQVQLYDGRSGDPFQRHTTVGYMYMLKLNHLVDDK
MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT
KMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGINMELEHDS
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggacttcggcaaactgccgagt
gtaatggatgtaccttacctcctggcgattcagttggactcctacagaaagtttacccag
gcagatgcttctgccgatgcgcgcacagatttcggtctgcatgctgcatttaagtcggta
ttccctattgtgagttattccgggaacgcagccctggaatatgtcagctatgccttaggc
aaagcggcatttgacgtgaatgaatgtattttgcgcggcgtgacttacgcagctcctttg
cgcgtaaaagttcgattgatcatttacgataaagaatctgcgaataaatccattaaggat
attaaagaacaagaagtctacatgggtgaaattccactcatgacggacaacggtaccttt
gttatcaatggtactgagcgagtgatcgtatctcagttgcatcgttcgcctggcgttttc
ttcgatcacgacaagggcaagactcactcatcgggtaaattgctatttaccgcgcgcgtg
attccttaccgtggttcgtggttggattttgaattcgatccgaaagatctggttttcgtc
cgtattgaccgtcgtcgcaagctgcctgctactattttgttgcgcgcgcttggctttacc
tcagagcaaatgctcgacatgttcttcgacaccagcaagtttgctatcaataaagatggt
gagtttgtgttggagctggtgccttcccgcctacgtggcgatgtggcaaccttcgacatc
aaagacaagaaaggtaaagtcttgatcgaagaggggcgtcgtattactgcacgtcatatt
cgcgatcttgagaaagcaggtatcacagacctagttgtacctaacagctatctcgttggc
aaggctttggcaaaagatatcgtcgacgaaaagaccggcgaattgttgcttgagtgtaat
actgaaattactgatgaagttttggaaacattgcgcgaagccaatgttaacgaaattgaa
accctgtacaccaatgacatcgactgcggtccttttgtttccgacacgctgcgtgtagac
cctactcgctcgccgctggaagcattggtagaaatctatcgcatgatgcgccctggtgag
ccaccaacaaaagaatctgcagaaacactgttccagaatctattcttcagccaagagcgt
tacgatctttctgcggtaggccgcatgaagttcaaccgtcgcttgagccgcgaagatgaa
actggcgaaggcgtattgtcaaacgacgatatcgtcgatgttatgcgcaccttaattgcg
atccgtaacggccaaggcgttgtcgatgatatcgatcacctgggtaaccgtcgcgttcgc
tctgtaggtgaaatggcagagaaccagttccgtgttggtttggttcgggttgagcgcgct
gttaaagagcgtttgtccatggcagaaagcgaaggtttgatgccgcaagatttgatcaac
gcgaaaccagtagccgccgcagtgaaggagttcttcggttcttctcagctgtcccagttc
atggatcaaaacaacccactgtccgaagtgacgcacaagcgtcgtgtatcagccttaggc
ccaggcggtctaacgcgcgagcgcgcaggtttcgaagtgcgcgacgtacatccgactcac
tacggtcgcgtatgtcccatcgaaacaccggaaggtccgaacattggtttgatcaattca
ttggcgacttatgcccgcactaacgattacggtttcctagagagcccttatcgcaaagtg
aaagatggccaagtcaccgatgagattgaatacttgtctgcgatcaatgaggctgagcaa
gttattgcacaggcgtcggcggtggttgataaaaatggcaagctaactgaagagttggtt
tctgttcgttattcaaacgaattcaccttgaaagctcctggtgatgtgacctacatggac
gtgagtccgcgtcaggttgtatctgttgcagcgtcgttgattccattcctggagcacgat
gatgccaaccgtgcattgatgggatcgaacatgcagcgtcaggctgtaccaacattgaaa
gctgagaagcctttagtgggtaccggtatggagcgtcacgttgcggtcgactctggtgtc
tgtgtggttgctaagcgtggcggtgttgtcgaccgtgtagatgcctcgcgtatcgtcatt
aaagtgaacgatggtgaagtggataccggtgatgctggtgttgatatttataatctcacc
aagtacacccgctcaaaccaaaatacctgtattaatcagcgcgccattgtaaaaactggt
gatgtgattgcccgtggtgacgtgttggctgacggtccttctgtggacatgggcgagctg
gccttgggtcaaaacatgcgcatcgcgttcatgccttggaatggctacaacttcgaagat
tccatcttggtttctgagcgtgttgtgcaagaagatcgtttcaccacgattcacattcaa
gagctgacctgtatcgcgcgcgatactaaattgggtagtgaagagatcacggcagatatt
ccaaacgtcggcgaaagtgcgctggcgaaactggatgaatccggcattgtttacatcggt
gccgaagtgggtgctggcgacattctggttggtaaggtaacacctaaaggtgaaactcag
ctgacgccagaagaaaagctgctgcgcgccattttcggtgagaaagcatcggacgtgaaa
gatacgtctctgcgtgttggtaccggtacccgcggtactgttatcgacgtgcaggtgttt
actcgcgacggtatcgagaaagatcagcgctctagagagatcgaaaagtctcagctagat
aaagtgcgtaaggatttgaatgaagaataccgcatcatggaaaatgcaaccttcgagcgt
ctgcgtgcagcgctagtgggtcaaaaagtttcctcaggtaaaaatgttaagaagggcgaa
gtgctcaccgatgacattttgaatgagttgccctatgagcagtggtacaagctgcgcatg
gcagaagatgcattgaacgagcagttggatgccgctgaagcaggcttgattgaacgtcgc
aaaattcttgacgagcgtttcgaagataagaagcgtaagttggaaactggcgatgatttg
tctcccggcgtgttgaagattgttaaggtctacttagcgattaagcgtcgtatccagcct
ggcgataagatggctggtcgtcacggtaacaaaggtgttatctccgtcatcatgccggta
gaagatatgccttatgacgagtttggtcagccggttgatatcgtgcttaacccgcttggc
gtaccttcgcgtatgaacgtgggtcaggtgctggaaatgcacttgggtatggctgcaaaa
ggcttaggcgacaagatcaacgtgatgctcgaagagcagcgtaagattgccgatgtgcgt
aagttcttggatgaggtgtacaacaaaaccggtgatgcattggcgaaagctgatctcact
aagttcaccgacgaagaagtgcttgagcttgcgggcaacctgcgcaacggcgtgcctatg
gcaacgccagtgtttgatggcgctaaggaaactgaaattaaagcgctgctgcgtttggca
gatctttctgacacaggtcaggttcagttgtatgacggtcgctccggtgacccattccag
cgtcacacgaccgttggttacatgtacatgctcaagttgaaccacttggttgacgacaaa
atgcacgcgcgttctaccggttcttacagcttggttactcagcagccgctgggtggtaaa
gcgcagttcggtggtcagcgtttcggtgagatggaggtgtgggcgttggaggcatacggt
gccgcttacaccctgcaagaaatgctcactgttaagtctgatgacgtgaatggccgtacg
aagatgtataaaaacatcgtagatggtgatcacagaatggaacctggcatgcccgaatct
ttcaacgtgttggtgaaagaaattcggtcactgggtattaacatggaattggaacacgat
tcttaa
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