Shewanella litorisediminis: JQC75_10965
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Entry
JQC75_10965 CDS
T07182
Symbol
xthA
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
slit
Shewanella litorisediminis
Pathway
slit03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JQC75_10965 (xthA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slit03400
]
JQC75_10965 (xthA)
Enzymes [BR:
slit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
JQC75_10965 (xthA)
DNA repair and recombination proteins [BR:
slit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
JQC75_10965 (xthA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
QRH00418
LinkDB
All DBs
Position
2507686..2508492
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AA seq
268 aa
AA seq
DB search
MKVVSFNINGLRSRLHQLQALIDTQAPDIIGLQETKVHDEAFPLADVEAMGYKVYYHGGK
AHYGVALLSKVEPESVEKGYPWDAEDAQRRMIIGKFRQPSGRLLTVMNGYFPQGESRDHE
IKFPAKRKFYADLQRLLTESYSSDDDIIIMGDINISPLDLDIGIGPDNAKRWLRTGKCSF
LPEEREWLQTLKDWGLYDNFRVLHPEQEGTYSWFDYRSKGFDDNRGLRIDVIMTTRTLTD
RLIASGVDYHIRAMEKPSDHAPVWSEFE
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcgtttcctttaacatcaatggcctgcgttcgcgcctgcatcaacttcaggcc
ctgatagatacccaggcgccggatattattggcctgcaggaaaccaaggtacacgacgaa
gcctttccgctcgccgatgtcgaggccatgggttacaaggtgtattaccatgggggcaag
gcccattatggcgtggcgttgctgtcaaaggttgagccagaatccgtggaaaagggttac
ccctgggatgctgaagatgcccaaagacggatgattattggtaaattccgtcagccaagc
ggtcgtctgctcacagtgatgaatggttacttcccccagggggaaagccgggatcatgaa
atcaagtttcccgccaagcgtaagttttatgccgatctccagcgcctcctgaccgaatct
tacagcagcgatgacgacatcatcatcatgggcgatatcaacatctcgccgctggatttg
gacataggtattggtccggataacgccaaacgctggctcagaaccggtaagtgcagtttc
ctgccggaagagcgagagtggctgcaaaccctgaaagactggggcttgtatgacaatttt
cgggtgttacatccggaacaggaaggcacctactcctggttcgattaccgcagtaagggc
tttgatgataatcgaggtctgcgtatcgatgtgatcatgaccacccgaacgctcaccgac
agattgatagcgtccggggtggattaccatattcgcgcaatggaaaagccgtcggatcac
gcccctgtctggagcgaattcgagtaa
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