KEGG   Salipaludibacillus sp. LMS25: MM221_00030
Entry
MM221_00030       CDS       T08296                                 
Symbol
rny
Name
(GenBank) ribonuclease Y
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
slms  Salipaludibacillus sp. LMS25
Pathway
slms03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:slms00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MM221_00030 (rny)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:slms03019]
    MM221_00030 (rny)
Messenger RNA biogenesis [BR:slms03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     MM221_00030 (rny)
SSDB
Motif
Pfam: RNase_Y_N HD KH_1 KH_PNO1_2nd HDOD KH_KhpA-B HHH_5 KH_2 KH_NusA_2nd Nup54 ATP-synt_B WDCP PFF1_TM DUF948
Other DBs
NCBI-ProteinID: UTR15029
LinkDB
Position
complement(5557..7122)
AA seq 521 aa
MDNLIIQILILLFTVAIGILIGYFVRKSIAEAKISSAEALARQTIEDAKREADSSKREAI
LEAKDEAHKMRMEAEQEVRDRRNDIQKQENRLVQKEEILDRKSETLDKKEETLEKREEQL
SKRQHEIDEMNSKVEELFNQQQQELERISGFSKEDAKEIIMKTVENELTHEKAVLVKEAI
TQAKEEADKKAKEILSLSLQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRALETL
TGIDLIIDDTPEAVILSGFDPIRREIAKTALEKLVQDGRIHPARIEETVDKARREVDELI
REYGEQTTFEMGIHNLHPDLIKIMGRLKFRTSYGQNVLKHSMEVAHLSGIMAAELGEDVQ
LARRAGLLHDIGKAIDHEVEGSHVEIGVELGNKYKEHPVVINSIASHHGDTEATSVIATL
VAAADALSAARPGARRETLETYIKRLEKLEEISESFEGVEKTYAIQAGREVRIMVKPDYI
TDEDSYRLARDITKKIEDELDYPGHIKVTVIRETRAVEYAK
NT seq 1566 nt   +upstreamnt  +downstreamnt
ttggataatctgatcatacaaatcctcattttgctattcactgtagcaatcggtatcttg
attggatacttcgttcgtaaatcaatcgccgaagcaaagatttcaagcgcagaggctttg
gcccgacaaacaattgaagatgctaagcgggaagcggactctagtaagcgtgaagccatc
ctcgaggcaaaagacgaggcgcacaagatgcgtatggaggccgaacaggaagttcgcgat
cgtcgaaacgatattcagaaacaagagaaccggttggttcaaaaggaagaaatattggat
cgaaaaagtgaaacgttggacaaaaaggaagagactcttgaaaaacgagaagagcaattg
tcaaaacgtcaacatgaaatcgacgagatgaatagcaaagtcgaggagttatttaatcaa
cagcagcaagaattagaaagaatttctgggttctctaaagaagatgcgaaagaaattatt
atgaaaacggtagaaaatgagttaacccatgaaaaagctgttctcgtcaaagaggctatt
acacaagctaaggaagaagctgataaaaaagcgaaagaaattctttctttatctttacag
cgatgtgcagctgatcatgtggctgagacgaccgtttctgtcgtaaacttaccgaatgat
gaaatgaaaggtcgaattatcggacgggaagggcgaaacatacgagctttagaaacgtta
actggcattgacctcattattgatgatacgccggaagccgttatcttatctggttttgat
ccgataagaagagaaatcgctaaaacggcgcttgaaaaacttgttcaggatggacgaatt
caccctgcccgaattgaagaaacagtggataaagctagacgtgaagttgatgaattaatt
cgtgagtatggagaacaaacaacgtttgaaatgggaattcacaatttacatcctgattta
atcaaaataatgggacgtcttaaatttcgaacaagctatggacagaatgtcttaaaacac
tctatggaagttgctcatctaagtggaataatggctgccgagttgggagaagatgttcaa
cttgccagacgagcaggccttttacatgatatcggtaaagcaattgaccatgaggtggaa
ggcagtcatgttgagatcggtgtggagcttggtaataagtataaagaacatccagttgtc
ataaacagtattgcatcacaccatggtgatacagaagcgacctctgttattgccacgtta
gttgcagctgcggatgccttatctgctgcgcgacctggtgcgcgtcgggagacattggag
acgtacattaagcgacttgaaaagcttgaggagatttctgaatcctttgaaggcgttgaa
aaaacatatgccattcaagctggacgtgaagtgcgtattatggtgaagcctgactacatt
acggatgaagattcgtatcgattagctagagatattacaaagaaaattgaagatgaactt
gactatccgggacatattaaagtaacggtcattcgtgaaacacgggcagttgagtatgca
aaataa

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