Salipaludibacillus sp. LMS25: MM221_00030
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Entry
MM221_00030 CDS
T08296
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
slms
Salipaludibacillus sp. LMS25
Pathway
slms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MM221_00030 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slms03019
]
MM221_00030 (rny)
Messenger RNA biogenesis [BR:
slms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MM221_00030 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_PNO1_2nd
HDOD
KH_KhpA-B
HHH_5
KH_2
KH_NusA_2nd
Nup54
ATP-synt_B
WDCP
PFF1_TM
DUF948
Motif
Other DBs
NCBI-ProteinID:
UTR15029
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Position
complement(5557..7122)
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AA seq
521 aa
AA seq
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MDNLIIQILILLFTVAIGILIGYFVRKSIAEAKISSAEALARQTIEDAKREADSSKREAI
LEAKDEAHKMRMEAEQEVRDRRNDIQKQENRLVQKEEILDRKSETLDKKEETLEKREEQL
SKRQHEIDEMNSKVEELFNQQQQELERISGFSKEDAKEIIMKTVENELTHEKAVLVKEAI
TQAKEEADKKAKEILSLSLQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRALETL
TGIDLIIDDTPEAVILSGFDPIRREIAKTALEKLVQDGRIHPARIEETVDKARREVDELI
REYGEQTTFEMGIHNLHPDLIKIMGRLKFRTSYGQNVLKHSMEVAHLSGIMAAELGEDVQ
LARRAGLLHDIGKAIDHEVEGSHVEIGVELGNKYKEHPVVINSIASHHGDTEATSVIATL
VAAADALSAARPGARRETLETYIKRLEKLEEISESFEGVEKTYAIQAGREVRIMVKPDYI
TDEDSYRLARDITKKIEDELDYPGHIKVTVIRETRAVEYAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
ttggataatctgatcatacaaatcctcattttgctattcactgtagcaatcggtatcttg
attggatacttcgttcgtaaatcaatcgccgaagcaaagatttcaagcgcagaggctttg
gcccgacaaacaattgaagatgctaagcgggaagcggactctagtaagcgtgaagccatc
ctcgaggcaaaagacgaggcgcacaagatgcgtatggaggccgaacaggaagttcgcgat
cgtcgaaacgatattcagaaacaagagaaccggttggttcaaaaggaagaaatattggat
cgaaaaagtgaaacgttggacaaaaaggaagagactcttgaaaaacgagaagagcaattg
tcaaaacgtcaacatgaaatcgacgagatgaatagcaaagtcgaggagttatttaatcaa
cagcagcaagaattagaaagaatttctgggttctctaaagaagatgcgaaagaaattatt
atgaaaacggtagaaaatgagttaacccatgaaaaagctgttctcgtcaaagaggctatt
acacaagctaaggaagaagctgataaaaaagcgaaagaaattctttctttatctttacag
cgatgtgcagctgatcatgtggctgagacgaccgtttctgtcgtaaacttaccgaatgat
gaaatgaaaggtcgaattatcggacgggaagggcgaaacatacgagctttagaaacgtta
actggcattgacctcattattgatgatacgccggaagccgttatcttatctggttttgat
ccgataagaagagaaatcgctaaaacggcgcttgaaaaacttgttcaggatggacgaatt
caccctgcccgaattgaagaaacagtggataaagctagacgtgaagttgatgaattaatt
cgtgagtatggagaacaaacaacgtttgaaatgggaattcacaatttacatcctgattta
atcaaaataatgggacgtcttaaatttcgaacaagctatggacagaatgtcttaaaacac
tctatggaagttgctcatctaagtggaataatggctgccgagttgggagaagatgttcaa
cttgccagacgagcaggccttttacatgatatcggtaaagcaattgaccatgaggtggaa
ggcagtcatgttgagatcggtgtggagcttggtaataagtataaagaacatccagttgtc
ataaacagtattgcatcacaccatggtgatacagaagcgacctctgttattgccacgtta
gttgcagctgcggatgccttatctgctgcgcgacctggtgcgcgtcgggagacattggag
acgtacattaagcgacttgaaaagcttgaggagatttctgaatcctttgaaggcgttgaa
aaaacatatgccattcaagctggacgtgaagtgcgtattatggtgaagcctgactacatt
acggatgaagattcgtatcgattagctagagatattacaaagaaaattgaagatgaactt
gactatccgggacatattaaagtaacggtcattcgtgaaacacgggcagttgagtatgca
aaataa
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