Sander lucioperca (pikeperch): 116036509
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Entry
116036509 CDS
T07345
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116036509 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sluc03021
]
116036509 (polr1a)
Enzymes [BR:
sluc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116036509 (polr1a)
Transcription machinery [BR:
sluc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
116036509 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
HMG_box
CDC45
BUD22
Motif
Other DBs
NCBI-GeneID:
116036509
NCBI-ProteinID:
XP_035861816
Ensembl:
ENSSLUG00000017324
LinkDB
All DBs
Position
1:53588648..53644965
Genome browser
AA seq
1694 aa
AA seq
DB search
MLFGKDVPWRRLEGLSFGMYSAEEIRKLSVKTITNFRFLDAVGNVAPNSLYDLALGPADS
KEVCSTCCQDFNNCPGHLGHVELPLPVYNPLFFDKLYLLIRGSCLSCHMLTCPRAAIHLL
LNQLKLVDHGNMQEVYQIEQVLSQHLEENPKATGDEIEQVLKTFTDKIVGENAQGSENTK
PIKHLVEKKSSLINDFWKIHMKTRKCPYCRSGRFTVRREHNSKLIVTMPSGVQTGDNTSE
ELMAGKRVYLTASTAREHTNKLWEKEGFFLKCLFSGLEQGTLSKEGEACFYPDLFFLDLL
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGLIRKLLALIAGEKTIQEEEAPDQTDQ
TFLSGIPGQTLTDKLYNIWIRLQTHVNIVFDSDMDKMMTEKYPGIRQILEKKDGLFRKHM
MGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHP
GASMVINEDGRRTILSSTSLAQREAVAKQLLTPCPGPHKMPMKIVNRHIKNGDVMLLNRQ
PTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELARAEAYTLVS
TDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRVQYIELVYRGLTDKPGRVKLLPP
AILKPQQLWTGKQVVSTLLLNVIPEKAVPLNLVGKSKIPSKAWIQVPPRAAPGYRPDSMC
DSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGGTSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKSGANRQRKKIIQESLKIGTKALQAAFNLPANVDQAEAQSRWQDAHLNP
DQRDFSTADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKSLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQ
SRQFPFIEDNYKVIKRSQCLDEVLARLDPKTASKHFASIQRWRAKREVACPRRGAFLLFS
QKKLAKLRQTEQSTEPDVYGRNAAIQQLVQQWRSLDDSGKSKYSRKSSRCPEPSLGMFRP
DVCFGSVSENFHSITEKYLENEGRMSQDSLDTDSLRQLLHYKWQRSLCDPGEAVGLLAAQ
SIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNNKKALKR
AKTLRKKLTRVCLAEVLQKVDVIETLRIEKHQKQRIFKVSFHFLSPDRYCDDKLLSPQQI
LQYMETRFFRLLLEAIKKRSAKLASIAVETRKATPRDKDHDGEGTADTAGLDDVEGEEER
EIVDDQGNEGDADASDAKRKDKQEEEVDYESEDEDRGDDGEDKDDQGEEEEENVEENVEK
TTPEESQPESAGVSAERKKKRARRGGEEESLNQMRVNAVLESNSAIERYCYDLEHELWCE
VDLALPVSKVHFDLTSVLSTLAQNAVIMETKGLTRCLLSETTKKTGEKETVLNTEGINMH
EMFRHSDILDVNRLYSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVAD
YMCFEGVYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKVV
KGGTGLFELKQPLQ
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttggaaaagacgtgccatggcggcgactggagggcttgtcgtttggcatgtat
tctgccgaagagataaggaagttaagtgtgaagactatcactaacttcaggttcctcgat
gctgttgggaatgtggccccgaacagcctgtacgatctggccctgggaccagcagacagc
aaagaggtgtgttcaacctgctgtcaggacttcaacaactgtccggggcacctgggacat
gtagagctacctctacctgtatacaaccctctgttctttgataaactctacctgttgatt
cgtggttcctgtctttcgtgtcatatgttaacgtgcccccgagctgccatccacctgctg
ctgaaccagctgaagttagtggaccatggaaacatgcaggaggtctaccaaatagaacaa
gttctcagccagcatctggaggagaatcccaaagccactggagatgagattgagcaggtg
ctgaagacgtttacagacaagatagttggagagaatgcacaaggttcagagaacaccaaa
ccgattaaacatcttgttgaaaagaagagcagtttgataaacgacttctggaagatccac
atgaaaactaggaagtgcccttactgcaggagtggcaggtttacagtgcgtcgtgaacac
aacagtaagctgattgtcacaatgccatcaggagtacagaccggtgacaatactagtgag
gagctgatggctggaaagagagtctacctgacggctagtaccgctagagaacacaccaac
aaactgtgggagaaagaaggtttcttcttgaagtgtctgttctctgggctggagcaaggg
acgctgtcaaaggagggagaggcatgtttttatccggaccttttcttcctggacctactg
gtggtcccaccttgcaggtatcgtccaattaatcgactgggtgaccagatgtttacaaac
ggtcagacagtcaacatgcaggctgtcatgaaggactgcggactcatccggaaacttctg
gctctcatagcaggggagaaaactattcaggaggaagaggctcctgaccagacggaccag
acgtttctgtcggggatccccggacagacgctaacagataaactctacaacatctggatc
cgactacagacccacgttaacattgtctttgacagtgacatggataaaatgatgacggag
aaataccctggaatcagacagatcttggagaagaaggacggattgttccggaaacacatg
atgggaaagcgagtggactacgctgcaagatcggtcatctgtccagacatgtacataggg
accaacgagatcggaatacctatggtgtttgccaccaagctgacctacccccagcctgtc
actccatggaatgtgaaggagcttcgtcaggccgttctcaacgggcccaacgtccacccc
ggtgcgtccatggtgataaacgaggacggcaggagaaccatcctctcctctaccagcctt
gcacagagagaggctgtcgccaagcaactgctgacgccctgtcctggtccacataagatg
cccatgaagattgtgaatcgtcatataaagaacggagatgttatgttactgaacagacag
ccaactctgcacagaccctccatacaagcccactgtgcacgcatcttaccaggagagaag
gtactaaggctccactatgccaactgcaaggcgtacaatgccgactttgatggagacgaa
atgaacgcacacttccctcaaagcgagctggccagagcagaggcctacacgttagtcagc
actgaccagcagtacctcgtccccaaggatggcaaacctttagcaggtctgatccaggac
cacatggtatcgggtacgaggatgaccatacgaggctgtttctttaccagagtccagtac
attgagctggtgtacagaggactgacggacaaaccaggcagagttaaactgctgccaccg
gccatactcaaaccccagcaactatggacagggaagcaggtggtgtctacgctcctgctg
aatgtaatcccagagaaggctgtgcctctcaacctggtcggcaaatcgaaaatccccagc
aaagcatggatccaagtcccaccgcgagctgctccaggatacagacctgacagcatgtgt
gactcacaggtggtgattcgccagggcgagctgttggtgggggttctggacaaagcccac
tacggctcctcagcctacggtctggtccactgctgctatgagctgtacggaggggggacc
agtggcaaactgctcagctgtctggctcgactcttcactgcttacctgcagctatacagg
ggctttacgctaggcgtggaagacatcctggtgaaatcgggagccaacaggcaaaggaaa
aagataattcaagaatcactgaagattggcaccaaagctctccaggcagccttcaacctg
cccgccaatgtggatcaagctgaggcccagagccgctggcaggatgctcacctcaaccca
gaccagagagacttcagcacggccgaccacaagttcaaagaagtggccaaccaagtgaac
aatgacattaacaaggtgtgcatgccagtcggactccacacctctttcccagacaacaac
ctccaactgatggtccaatcaggagccaagggatctactgtaaacaccatgcagatttcg
tgtctactaggtcagatcgagttggagggccgtaggcctccactgatgccttctgggaaa
tccttgccgtgcttccagccatatgatcctgcacctggtgccgggggcttcgtttctgga
aggttcctcacaggcatcaaaccacaggagtttttcttccactgtatggctggcagagag
ggactggtcgacacagctgtgaaaacatctagatcaggatacctgcagagatgtgtcata
aagcatctggagggtttggtagtgcagtatgatctgacggtgagggatagcgatggatct
gtggtccagttcttgtacggtgaagatggactggatattcccaagactcagttcctgcag
tcaagacagttccccttcatcgaggacaactacaaggtcatcaagaggtcccagtgcctg
gacgaggttttggcacgtttggaccctaagaccgccagcaaacactttgcgtccatccag
cgctggagagcaaagagagaggtggcatgtccacggagaggagcattcttgctgttttct
caaaagaagttggccaaactgagacagactgaacaaagcacagaacccgacgtctacggc
agaaatgctgctatacagcagctcgtacagcagtggcgctcactggatgattccggcaaa
tcgaaatacagccggaagtcgtcccgctgccctgagccatctctgggcatgttcaggcct
gacgtctgctttggatcggtatcggaaaactttcacagcatcacggagaaatacctcgag
aacgagggcagaatgagtcaagacagcctggacaccgacagccttcggcagctgttgcac
tataagtggcagcgttcactgtgtgatccgggagaagcagtgggtctgctggcggctcag
tccataggcgagccctccacccagatgaccctcaacaccttccactttgctggcagagga
gagatgaacgtcactttggggatacctcgactgagagagatcctgatggtggccagctcc
aacattaaaactcccatgatgagcgttccagtgctgaacaacaagaaagccttgaagagg
gccaagacgctccgtaagaaactgaccagagtctgtctggctgaggtgctgcagaaggtg
gatgtgattgagacattacggattgaaaagcaccaaaagcaacggatattcaaagtctcc
ttccacttcctttctcctgaccgttactgtgacgataagctgctatcaccccaacagatc
ctccagtacatggaaactaggtttttccgtctcctcctcgaagccattaagaagcgcagt
gccaagctggcttccattgccgtggaaacaaggaaggccacccccagagataaggaccat
gatggcgagggaacagctgacacggcagggttagacgacgtggagggcgaagaggagcga
gagattgttgatgaccaggggaacgaaggagacgctgatgcctcagatgccaagcgaaaa
gacaaacaggaagaggaggtggactacgagagcgaggatgaggacagaggggacgatggc
gaggacaaagacgatcagggggaggaagaggaggagaatgtggaggagaatgtggagaag
accacgccggaggagtcccagccagagtctgcaggagtgagcgcggagaggaagaagaaa
cgagcgagaagaggcggagaggaagagagcttgaatcagatgagggtgaacgctgtcctg
gagtccaactccgccatagagagatactgctacgatctcgagcacgagctgtggtgtgag
gttgacctggccttaccggtgagcaaggtgcactttgacctgacttcagtcctgtccaca
ctggcccagaacgccgtcatcatggagaccaaaggcctgacacgctgcctgctgagcgaa
accacaaaaaagacgggagagaaagagacggttctcaacacagagggcatcaacatgcat
gaaatgttcaggcacagtgacatcttggacgtcaacagactgtactccaatgaggtccac
gccatggctaacacctatgggattgaagtggctctgaaggtgatagagaaggagatcaaa
gatgtctttgctgtctatggcatcgaggtggaccccagacatctgtcactggtagcagat
tacatgtgttttgaaggcgtctataagccgctgaaccggcatgccatccgctccaactcc
tcccctctacagcagatgaccttcgagaccagctacaaattcctcaaacaggccaccatg
ctggggtcacatgatcagctggtgtccccctcagcctgcctggtggtggggaaagtggtc
aaaggtggaacaggactgtttgaactgaaacaaccgctgcagtag
DBGET
integrated database retrieval system
