Sander lucioperca (pikeperch): 116056672
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Entry
116056672 CDS
T07345
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2 isoform X1
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116056672 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sluc03041
]
116056672 (usp39)
Spliceosome [BR:
sluc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
116056672 (usp39)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
116056672
NCBI-ProteinID:
XP_031164786
Ensembl:
ENSSLUG00000008012
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All DBs
Position
2:13163167..13170424
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AA seq
518 aa
AA seq
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MVQEAMAHIQAAPRLTVTMVSLKREREIEVDDDDNEDRVPAKIGRGRVIEDRRSRHCPYL
DTINRSVLDFDFEKLCSISLSHINVYACLICGKYFQGRGLKSHAYTHSVQFTHHVFLNLH
TLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQHIAGLDKQGKLYRAYDGTTYLPGIVGLN
NIKANDYANVVLQAFSNVPPLRNYFLEEENYRGIRRPPGDIMFLLVQRFGELMRKLWNPR
NFKAHVSPHEMLQAVVLCSKKNFQITKQGDAVDFMTWFLNALHGALGGTKKRSSIIAKAF
QGSMRIFSKKLPHPDLTPEEKEALLVTEEYQEQMSESTFLFLTLDLPTAPLYKDEKEQLI
IPQVPLFNILGKFNGNTEKEYKTYKENFLKRFQLTKLPPYLVFCIKRFTKNNFFVEKNPT
IVNFPITNVDLREYLTEEAQVTEKYTTYDLVANVVHDGKPTEGAYRIHVLHHGTGKWYEM
QDLQVTDILPQMITLSEAYIQIWKRQGSDNGTNHHTGV
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggtgcaggaagccatggctcatatccaagcggcccccaggcttactgttacgatggtt
tctctgaaacgagaaagagagattgaagtggacgatgatgacaacgaagacagagtgcca
gccaaaataggcagaggacgtgtaatagaagaccggagaagccgccactgtccttacctt
gacaccataaacaggagtgtgctggacttcgactttgagaaactctgctcaatctctctc
tcccacatcaatgtctatgcctgccttatatgtgggaaatactttcaaggtagaggtttg
aagtcccatgcttacactcacagtgtgcagtttacccatcatgtgttcctgaatctgcac
acacttaagttttactgtctgccagacaactacgagatcattgactcttcactagaagat
atcacgtatgtgctaaaaccaactttcaccaagcagcacattgcggggctggacaagcag
ggtaaactgtaccgagcctatgatggtacgacctacctgccaggcattgtagggctcaac
aacatcaaagccaatgactatgccaatgtggtgttacaggctttttccaatgttccaccg
ttgcgaaactacttcctggaggaggaaaactacaggggaatccgcaggccaccgggggac
attatgttcctcttggtgcagaggtttggtgaactgatgcgcaaactttggaatccgaga
aacttcaaagctcatgtgtcaccacatgagatgctgcaggcggtggtgctctgcagcaag
aagaacttccaaatcaccaagcaaggagatgctgtggacttcatgacgtggttcttgaat
gctctgcatggtgctcttggaggcacaaagaaaagatcatcaatcattgctaaagcattt
caaggctccatgcggatcttctccaagaaacttccacacccagacttgactccggaggag
aaagaggcattgctcgtaacagaggagtaccaggagcagatgtctgagtccaccttcctg
tttcttacccttgacctcccaacagctccactgtacaaggatgagaaggagcagcttatt
atcccgcaggtccccctcttcaacatcctgggcaagttcaatggcaacacagagaaggag
tacaaaacctacaaagagaattttctcaaaaggttccagctgaccaaactgcctccgtac
ctcgtcttttgcatcaaaagattcaccaagaacaacttctttgtggaaaagaatcccaca
attgtcaacttccccatcacgaatgtagaccttcgtgagtacctgacagaagaagctcaa
gttacagagaaatacacaacatatgacctggtcgccaacgtagtgcatgatgggaaaccc
accgagggagcatacagaatacatgttctgcatcatggaactgggaagtggtatgagatg
caggacctgcaggtgaccgacattctcccccagatgattacgctgtcggaggcctacatc
cagatctggaagagacaagggagtgacaatggcacaaaccaccacacaggggtgtaa
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