Sander lucioperca (pikeperch): 116067053
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Entry
116067053 CDS
T07345
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04510
Focal adhesion
sluc04512
ECM-receptor interaction
sluc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116067053 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116067053 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116067053 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sluc00535
]
116067053 (col9a2)
Proteoglycans [BR:
sluc00535
]
Extracellular matrix (ECM) proteoglycans
Others
116067053 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116067053
NCBI-ProteinID:
XP_031179211
Ensembl:
ENSSLUG00000008924
UniProt:
A0A8C9Y8S6
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All DBs
Position
16:10598846..10747225
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AA seq
691 aa
AA seq
DB search
MAALSALLKTWVILQTLCLALAQVRGPPGPQGQPGPPGPSGMPGSDGIDGDKGPPGPPGP
PGQKGEPGEPGPDGAPGENGIDGLIGAKGDRGPIGSPGPKGQPGPSGEPGPPGAGLPGLA
GAAGPIGLPGEIGQTGPKGIMGPAGPPGLPGPPGKPGPPGKFIGGEEGSADFQCPLNCPA
GPKGPQGLQGVKGHKGRAGVLGEPGSIGKSGPKGEVGISGEQGIPGPPGPMGLRGYPGMM
GPKGEAGPRGYKGINGPVGIPGPPGEEGPQGPPGEAGDKGDKGSQGIQGPQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGSPGQAGMPGPPGPQGTAGLPGSPGSKGGPGAKGEPGPRGHI
GMSGAPGPLGEPGLPGVAGMEGVPGPKGDRGQRGEVGPQGIVGKAGNKGERGPIGVPGAQ
GLSGTKGDKGFQGKVGSKGDDGDPGVEGLAGEKGEKGLSGEPGPKGQQGIRGDPGHNGPT
GDPGKPGDVGPPGLPGPRGLNGERGVPGMPGIQGSLGRDASDQHIIEVVLKMLQERLAAV
AVSAKRAVLGGAGVMGPPGPPGPPGSPGPQGPHGLPGARGIPGIIGGPGQIGNTGLKGKR
GSKGDRGDPGKPHPGPPGPPGIQGPPGVDGVARDGRHGERGPQGSAGEAGRPGKAGPVGL
PGFCEAAMCLAASAYTSPRLQEAGTIKGPNV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctttctgccttgctgaagacctgggtaatactgcagaccttgtgcctggct
ctggcccaagtgaggggtccacccggacctcagggccagcccggcccaccaggcccctct
ggcatgcctgggtcagacggcattgatggagacaaaggaccacctgggccccctggtcca
ccaggacaaaagggagagccaggagagccaggtcccgatggagcaccaggagagaatggc
attgatggtttgattggagcaaagggggatcgaggtcctattggaagccctggccctaag
ggtcaacctggaccaagtggtgaacctggacctcctggagccggccttccaggactggct
ggtgctgcagggccaattggtcttccaggtgaaattggacaaactggaccaaagggtatc
atgggaccagctggacccccaggacttcctggacctcctggcaagccaggtcctccaggg
aagttcatcggtggagaagagggaagtgccgacttccagtgtcctcttaactgtccagca
ggacctaaaggcccccagggactgcagggagtcaagggacacaaaggacgtgctggggtt
ctcggagagcctggtagcataggaaaatcgggtcccaagggtgaagtgggcatctctggg
gaacagggcatcccaggacctccgggtccaatgggtctgaggggctatccaggaatgatg
ggtcctaaaggggaagcagggcctcgtggttacaagggcatcaacggacctgtaggaatt
cctggacctcctggtgaggagggacctcagggaccacccggagaggcaggagacaaggga
gacaaaggcagccaaggtatccagggcccacagggtgcggttggcaaaaagggagagaat
ggtctgccgggtattgatggaaaagatggcacacctggtattcctggaatcaagggcagc
cccggccaggctgggatgcctggtcctcctggtcctcagggaacagcgggattgcctggc
agcccagggtccaaaggtggacctggagctaagggcgagcctggacctaggggtcacatt
ggcatgtctggtgcccccggacctctgggtgagcctggtcttcctggtgtggctggtatg
gaaggagttcctggacccaagggtgacagaggccagcggggagaagttgggccacaggga
atagtcggcaaggctggaaacaaaggagagagaggaccaatcggtgttccaggggcccag
ggtctcagtggaaccaaaggagacaagggcttccaaggaaaagtcgggtcaaagggagac
gatggtgaccccggtgttgagggattggctggcgagaaaggtgaaaagggtttgtctggt
gaacccgggcccaaaggacagcaaggaattaggggtgatccaggacacaatggacctact
ggagaccctggtaaacctggagacgtgggaccaccaggactgcccggtcctaggggactc
aatggagagcgaggagtacccggcatgccaggcattcagggatcactaggacgcgatgca
tctgaccagcatatcattgaagtggtgttgaagatgttgcaggagaggctagctgcagtg
gcggtgagcgccaagagggctgtgctcggtggagcaggtgtgatgggacctcccgggccc
cctggccctccagggtcacctggtcctcaggggccacatggcttacctggagcccgtggc
attcctggcatcattggaggacctggacagattggaaacacaggacttaaaggaaagaga
gggtcaaagggagatagaggagatcctggtaaaccccacccaggaccaccaggaccccca
ggaatacaaggtcctcctggtgtcgacggtgtggctcgggacggtaggcacggcgagaga
ggacctcagggatcagccggagaggctggtcgtcccggtaaggcaggtccagtaggtctc
ccaggcttttgcgaggcggcgatgtgtcttgctgcatcagcgtacacctccccgagacta
caggaggcgggaacaatcaaaggacccaatgtttag
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