Solanum lycopersicum (tomato): 101247817
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Entry
101247817 CDS
T02665
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101247817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101247817
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
101247817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_16
TPR_14
TPR_17
TPR_8
TPR_12
TPR_7
TPR_19
TPR_9
TPR_CcmH_CycH
TPR_6
ARM_TT21_C
TPR_15
UNC80_C
TPR_10
TPR_NPHP3
Y2_Tnp
DUF6584
Motif
Other DBs
NCBI-GeneID:
101247817
NCBI-ProteinID:
XP_010320493
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All DBs
Position
4:68315811..68337756
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AA seq
1179 aa
AA seq
DB search
MSVEDDAAIRRLEEAVVSQPGDPSLHFDLGVLLWDKGGELPDIKEKAAQHFLIAAKLNPQ
NPAAFTYLGHYYARVAVDSQRAIKCYQRALSLNPDDSIAGEAVCDILDATGKETLEIAVC
REASLKSPRAFWALCRLGYLLVNQNKWSEAVQSLQQAIRGYPTCADLWEALGLSYQQMGM
FTAAVKSYGRAIELEESRVFALVESGNVYLMLGSFRKGIEQFQQALQISPLNLSAHHGLA
SALLSLAKESIDYGAFKWGASLLEEASKVALASTSIVGNISCAWKLLGDIQLTYAKCFPW
MDEGLGSGADENSFSSSILSWKRMCCLAVRSACCSYQRALHLSPWQANVYTDVAIASDLL
FSLKENCKDDMSPWFVSEKMCLGGLLLEGCNSEFWVALGCLSDHSALKQHAFIRALQLDV
SLAVAWAYLGKLYRQEGESQLAQLAFDRARSIDPSLSLPWSGMSADATARNLKPDEAYEC
CLRAVQIFPLAEFQTGLVKLALQSGYLRSPEAFGAIQQALQRAPQYPESHNLKGLVCEAR
SDYESAVASYRLARLAARVFARKLSKSYLADISINLTRSLCMAGNADDAIEECKYLESKG
LLDVESLQLYALSYWKLGKYDLALSMAKRLASSALPTEHPLAAASVSFICRLVYHISGKE
LAIRNILQLPKRAFQSSRVRLVAFAIHALDESHQLDSVVSCVRESLSSNKEIAALDFLAT
LGLLVKHGSKDCLEVQKGVNYLRRALHTSPNSHLIRTLLGYLLVSSREWKDVHISARCFR
VDPSEHQKKEGVKSSVQIFGAGAVACCNVGSGKKTLAMSICRENSTLECKTIKLLQKCVH
QEPWDHHSYYLLVLNYLQKAREKKFPRNLCVVLERLINVALRSELYAKDDISSQYQKFQL
LLCAAEVSLHCGNNFKCIMHAKSTLEMQLPDNYLFFAHLLLCRAYAVEDNYSGLHEEYIR
CLQLKTDNHIGWICLKFLESRYKLQSDSSSLALAFQECGKEIKTSWNMWIAMYNLVQGLT
AAWNGEFIDAEESIAQACLLAGGESCLFLSHGVICMEIARQQSDSDFLSLAIRSLKKAKD
SSSTPLPFVSLLLAQAEASFGSESKWEKNLIEEWSSWRPEIRPAELFFQMHLLARRLTEG
SVAMSNLEPSTSPLRWILQAIHINPSCLRYWRALLKFME
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagaagacgatgctgctataagacggttagaagaagcggttgtctcccagccc
ggcgacccttctctccattttgatctcggagtcttattatgggacaagggaggagaattg
ccagatattaaggagaaagccgcacaacattttctcatagcagccaagctcaacccacaa
aaccctgctgctttcacatatttgggacattactatgctcgagtagctgtcgactctcag
agggctatcaagtgttatcagagagcccttagccttaatccagacgattcaattgctggg
gaagcagtttgtgatatactggacgcaactggaaaagagaccttggagatagctgtatgc
cgtgaagcttcactcaagtcgcccagggccttttgggctttatgcagattgggttacctt
ctggtcaaccaaaacaagtggtccgaagccgtgcagagtcttcagcaggccatcagaggc
tatcccacatgtgctgatttgtgggaggccctgggtctatcctaccagcaaatgggcatg
tttacagccgctgttaagtcctatggaagagctattgaattggaggaatcacgagtattt
gcactggtagaaagcggaaatgtctatttgatgcttggttcgtttcggaagggaatagag
cagtttcaacaagctttacaaatctcacctctgaatttgtccgcgcatcacgggcttgcc
tctgcactccttagtttggcaaaggaatccattgattatggtgcctttaaatggggagct
tcactcttagaggaagcttcaaaggtggctctagcaagtacttccattgttggcaatata
tcttgtgcttggaagctgcttggagatattcagctcacatatgcaaaatgttttccatgg
atggatgaaggattgggctcaggagctgacgaaaattcattcagcagttcgatcttgtca
tggaagagaatgtgctgtttagcagtcagatctgcttgttgctcctaccagcgggcattg
catttgtccccttggcaagctaatgtgtatactgatgttgccattgcatctgatcttctt
ttctcgttaaaggagaactgtaaagatgacatgagcccttggtttgtgtctgaaaagatg
tgccttggaggcttattgcttgaaggttgcaatagcgagttttgggtagccttagggtgt
ttatctgatcattctgcattaaagcaacatgctttcatacgagcactgcagttggatgtt
tctcttgctgttgcatgggcatatcttggaaagctttataggcaggaaggggaaagtcaa
ttggctcagctagcatttgatcgtgcaagaagtattgatccttcactttcattgccatgg
tcaggcatgtcggctgatgctactgcaaggaatctgaaaccagacgaggcttatgagtgc
tgtctgcgggcggttcagatctttccacttgcagaattccaaacaggtctagttaagctt
gctctgcagtcaggttatctgcgatctccagaggcatttggagccatccagcaggctttg
cagcgcgcacctcagtatcctgaatctcacaatctgaaagggctagtttgtgaggcacgg
agtgattatgaaagtgctgttgcctcatataggctggcacgccttgctgccagagttttt
gcaagaaagctttcaaaatcatatcttgcagatatatcgattaatttgaccaggtcactt
tgtatggcaggaaatgctgatgatgctattgaagaatgtaagtatttggaaagcaaaggt
cttctggatgtagaaagtttgcagctttatgcgctttcttattggaaacttggaaaatat
gaccttgctctttctatggcaaagagactggcctcatctgctttaccaacggagcatcca
ttggctgctgcctccgtcagtttcatctgtagattagtatatcatatttcagggaaggaa
ttagctataagaaacatattacaactgccaaaaagagccttccagagttcaagagttagg
cttgtagcatttgctattcatgcattagatgaaagtcatcagcttgactcagttgtttca
tgtgttcgtgagtctctttcatctaacaaagagattgctgcgctggatttcctggccaca
ctgggcttactagtcaaacatggatctaaggactgcctagaagttcagaagggggtcaat
tatctaagaagagctcttcatacttctccaaacagtcatttgataaggacccttcttggc
tatctgttagtatccagcagggaatggaaagatgttcacatttcagctcgatgcttcaga
gtggatccttctgaacatcagaaaaaggaaggtgttaaatccagtgttcagatttttggt
gctggagcagttgcttgctgtaatgtggggagcggcaagaagacactagcaatgtccatc
tgtagagaaaattcaacactggagtgcaaaacgatcaagctgctgcagaagtgtgtccat
caggagccttgggaccatcattcatattacctccttgtactaaattatcttcagaaggcg
cgggagaagaaatttcctcgtaacctgtgtgttgttcttgagaggttgataaatgtggct
cttcgaagtgagctttatgcaaaagatgatatttcttcccagtaccaaaagttccagctt
ctgctttgtgccgcggaggttagtttgcattgtgggaataatttcaagtgcattatgcat
gcaaaaagtactctagagatgcagcttccagataactacctcttctttgcacacttgcta
ctatgtcgtgcctatgctgtagaagataattattcaggacttcatgaagaatacataagg
tgcttgcagctaaaaactgataatcatattggttggatttgtcttaagtttcttgaaagt
cgatacaagctgcagtcagattccagttcactagccttggcctttcaagagtgtggcaaa
gaaataaaaacttcgtggaacatgtggattgctatgtataatttggttcaaggtctaact
gcagcttggaatggggaatttattgatgcagaagagtctattgcgcaagcttgcttgttg
gcgggtggcgagagttgcctttttcttagccatggtgttatttgcatggagattgccagg
cagcagtccgattcagattttttatcacttgctattagaagtctgaagaaagcaaaagac
agttcttcaacgccactaccctttgtctcactgctactggcacaagcagaagctagcttc
ggctctgaatcgaagtgggaaaagaacctcattgaggaatggtcatcttggcggccagag
attaggcctgctgaactgtttttccagatgcatttgcttgctagacggctgacggaaggt
tccgtagctatgtccaatctggagccatctacaagtcctctaagatggatacttcaagct
atccatatcaatccatcttgtttgagatattggagagctttgctgaaatttatggagtaa
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