KEGG   Solanum lycopersicum (tomato): 101254575
Entry
101254575         CDS       T02665                                 
Name
(RefSeq) splicing factor SF3a60 homolog
  KO
K12827  splicing factor 3A subunit 3
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101254575
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sly03041]
    101254575
Spliceosome [BR:sly03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    101254575
 Complex B
    101254575
 Complex C
   U2 SnRNP specific factors
    101254575
SSDB
Motif
Pfam: SF3a60_Prp9_C SDE2_2C SF3A3 SF3a60_bindingd Desulfoferrod_N
Other DBs
NCBI-GeneID: 101254575
NCBI-ProteinID: XP_004234956
UniProt: A0A3Q7FN63
LinkDB
Position
3:complement(50060905..50070154)
AA seq 509 aa
MSSTLLEVTRASHEEVERFERLIVKDLQTEPATNKDRLHQSHRVRNMIEQIIDTTHKLVD
IYEDKDGARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRRHPAARAIIDTGDEYEQL
LKEEPQIEFSGEEGSGRYLDLHELFNEYINSKFGEPIEYTAYLNVFSEPQKIPRKAKTTR
RYLEYLQKLLEYLVYFFERTEPLQDLDRIFSKVTSEFEEEWTLGKVEGWENNGQENGSAP
ENYTVIDLDYYSTAEELMVVGPEKLKEALGALGLKTGGTIQQRAERLFLTKNISLEKLDR
KHFAKGSWKPEQNSVVATSHVGDVKEIALLEAKIRRLCDLLDETIVRTRENVEKKQALTY
EEMEAEREEDDVQAESESDDEDQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICG
NHSYWGRRAYERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKLLWERIQERQGVNKWR
PDLEEEYEDQEGNIYNKKTYTDLQRQGLI
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtcgtcgactctactggaggtgactcgtgcatcgcacgaggaagttgagcggttcgag
cgccttattgtgaaggatctccagactgagccggccactaacaaggaccggctccaccag
agccaccgcgttcgtaacatgatcgagcaaatcattgataccacacacaaactagtagat
atatatgaagacaaagacggagcgaggaaggatgaaattgcagctctgggaggccagaca
gcaactggaacaaatgtgtttagtgcattttatgacagattgaaagagattcgtgagtac
catagaaggcatcctgctgcgcgtgctattattgatactggtgatgaatatgagcagctc
ctcaaagaagaaccacaaattgagtttagcggcgaggaaggttctgggcgataccttgac
ttacatgaattgtttaacgagtatatcaactccaaatttggtgaaccaattgaatacacg
gcttatcttaatgtattttctgaaccacagaagattcctcgtaaagcaaagacgactagg
cggtacctagaatatttgcagaaactattggagtatctggtctacttttttgagcggacg
gagcccttgcaggatcttgataggatattttcaaaggtaacaagtgaattcgaagaggag
tggactttgggcaaggtagaaggatgggaaaataatggtcaggaaaatggaagtgctcca
gagaattatactgtgattgatcttgattattatagtacagctgaggagctgatggtagtg
ggaccagagaagttaaaggaggcattgggagcactgggactgaagacaggaggtactatt
cagcaacgtgccgagagacttttccttacgaagaacatctcgcttgaaaaactagacaga
aagcatttcgccaagggttcgtggaaaccagaacaaaacagtgttgttgcgacttctcac
gtgggtgatgttaaagagattgctctcttggaagccaagataagaaggctatgtgatctg
ttggatgagacaattgtgcggacaagagaaaatgttgagaaaaagcaggctttgacatat
gaagaaatggaggcagaacgtgaagaggacgatgttcaggctgagtctgagagtgatgat
gaagaccaacaaatttataatcctctgaaattgccaatgggctgggatgggaaacctatt
ccatactggttgtataaacttcacggtcttggtcaggagttcaagtgtgagatatgtggg
aaccatagttactggggccgtagggcttatgagcggcatttcaaggaatggagacatcaa
catgggatgcgttgtctcggtatcccaaatactaaaaacttcaatgagatcacatcaatc
gaagaagccaagctactttgggaaagaatccaagaaagacaaggggtgaataagtggcgc
cctgatcttgaagaagaatatgaagatcaagagggcaacatctacaacaaaaagacatat
actgatcttcaacgccagggattgatatag

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