Solanum lycopersicum (tomato): 101257794
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Entry
101257794 CDS
T02665
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101257794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sly03400
]
101257794
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
101257794
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
nSTAND3
AAA_11
NTP_transf_2
Motif
Other DBs
NCBI-GeneID:
101257794
NCBI-ProteinID:
XP_004246174
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Position
8:63711956..63715230
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AA seq
884 aa
AA seq
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MDSGDGSVSKRRTRQQSLKHMVEIVEKRKELSQSGDSTNGRKRKKMETSGVENNGRRKFS
RGASEYLTKQSFVEEVSDDDDSSSEETVSDPDVDVDIVEEEGGSDADVVIIAEEEEEELE
ETDPDATSYYKSEIESSTDALRKTPKKILEESKFLKFIVDSIKNVDDCKEVPPPEEKEHV
SVKETLPLVFRFKDEEPLPPEKEEWEKEIEDLFSEMNMCILESNIGFTNPSVSVMQSGEL
SECQMGNHKLKLDEQIGLLCSVCSYVHLEMKYIFPDFARRTQGRYERKCFGESSSILDVD
GFKVPDSSAAEESPVFGEGTVWDLVPKGSKDTMYPHQRGGFEFMWNNIAGDTKIERFREP
LLESKGGCIISHPPGTGKTRLAIVFLQSYLKLFPKCRPVVIAPSNLLLNWEAEFQKWAMD
IPFHNLNSKNFSLKEDEGTVGVFHCLSGAAKKNPHLIRMVKLKSWAKSKSVLGISYDLFK
ILTGEDGESYNKELREILLKFPSLLVLEEGHTARNEHSLVWKALKKVETEKRILLSGTPF
QNNIKELYNTLCVVSPKFAADLEQKWASLSSSIDKNARALEELRDILSPLVHKCSENVKK
VGLPGIRDTVIHLKPTELQKELLKRVPENPGSFYEQNLMSLISVHPSLVANRKEFSELES
QLKERRCRLDPDIGVKMKFVIELIRLCGGLKERVIIFSQLLDPLNLIKEQLNSLFSWTLG
REILYMDGKLDVNQRQISINSLNDPKSDVKVLLASTKACSEGISLIGASRVVLLDVLWNP
SVEQQAISRAYRTGQKKFVHVYCPVTSKWEVDKIEQQTRKRYHSDVILSRNEENTSCSVS
EDIILECMVKHDGLRHIFEKLSHAPRVVPSTCFNFGSQPSKGSS
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggattcaggggacggctctgtttcaaagaggagaactagacaacaatctttaaaacat
atggtggagattgttgaaaagaggaaggagttgagtcaaagtggggattctacaaatgga
aggaaaagaaaaaagatggagacttctggagtggaaaacaatgggaggaggaagttcagc
cgaggagcttctgagtacttaacaaagcagagtttcgttgaggaagtatctgatgatgat
gattcatcatcggaggaaactgtttctgatcctgatgttgatgttgatattgttgaggag
gaggggggaagtgatgctgatgttgttatcattgcggaggaggaagaggaggagttggag
gagacagatcctgatgcaacctcatactataagtcggaaatcgaatcttcaactgatgct
cttcgaaagactccgaagaagattcttgaagagtccaaatttcttaaattcattgttgat
tcaataaaaaatgtcgatgattgcaaagaagtccctcctccagaagagaaggaacatgtt
tctgtcaaagaaacacttcctttagtattccgatttaaagacgaggaacctcttccccct
gagaaagaagaatgggaaaaggaaatagaagatcttttctctgagatgaacatgtgcatc
ttggaatcaaatattggatttacgaatccatcagtttcggtgatgcagagtggagaatta
agtgaatgtcaaatggggaaccacaagcttaagctagacgaacaaataggactcctctgt
tcagtttgttcatatgtccatttggagatgaaatacatcttccctgattttgctcggaga
acacaagggaggtacgaaagaaaatgctttggagaatcctcatcaatcttggatgttgac
ggcttcaaagttcctgattcttcagcagccgaggagtctcccgtttttggagaaggaacc
gtgtgggatttggttcccaaaggttccaaagatactatgtatcctcatcaacgaggaggg
ttcgagttcatgtggaacaacatcgctggagatacgaagattgaaaggtttagagagccc
ctattggagagtaagggagggtgcattatctcacacccacctggaaccggaaaaacacga
ctggccatagtgtttcttcagtcgtatctgaagctgttcccaaagtgtcggcctgtagtc
atagctccgtcaaatttacttcttaactgggaagcggagttccaaaaatgggcgatggat
attcccttccacaatttgaacagcaagaacttttctttaaaggaagacgaaggtactgtt
ggtgtctttcactgtttatccggtgctgcgaaaaaaaatccacatcttatacggatggtg
aagctgaaatcctgggcgaaaagtaagagtgttttgggaattagttacgatttgttcaag
attctcacaggagaagatggagaaagttataacaaagagcttagggaaatactcctaaag
tttcctagtctgctggtccttgaagaggggcacactgctcggaatgagcacagccttgtg
tggaaagcactgaagaaggttgaaacagagaagcgcatacttctttctggaactccgttc
cagaataacatcaaagaactgtacaacactctctgtgtagttagtccaaagtttgctgct
gatttggagcagaaatgggcttctcttagcagttccattgacaagaatgcccgagcgttg
gaagagcttagggatattctttcaccccttgtccataaatgtagcgaaaatgtaaagaag
gtaggccttccaggtatacgggatacagtaatacatttgaaacccacagagttgcagaag
gagttacttaaaagagttccagagaatccgggatccttttatgaacaaaatctgatgtct
ctgatctctgttcatccttcattagtggcaaataggaaggagttctctgagttagaaagt
cagctcaaggaaagaagatgtcggttggatcctgatattggagtaaaaatgaaatttgtt
attgaactgatcagactatgtggtggattgaaagagagggttatcatatttagccagtta
cttgatcctctaaacctgatcaaggagcagctcaattctctctttagctggactttaggt
cgagagattctctatatggatgggaaacttgatgtaaaccagcggcagatatcaataaat
tctcttaatgaccctaagagtgatgtcaaagtgcttcttgcatcgacaaaagcctgctca
gaagggataagtctaataggggcctcaagagtggttttgcttgacgttctctggaatccc
tcggtagaacagcaagcaatcagtcgagcatacaggactggtcagaaaaaatttgttcat
gtttactgtccagtgacatcgaaatgggaggttgacaagatcgaacaacaaacaagaaag
agatatcattcagatgtaatactgtccaggaatgaagagaacacttcatgttctgtgtca
gaggatatcatactagaatgcatggttaagcatgacggcctccgtcatatttttgaaaag
ctatctcatgcacctcgtgtggtgccttcgacatgctttaattttggtagccaaccttca
aaagggagcagttag
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