Solanum lycopersicum (tomato): 101267397
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Entry
101267397 CDS
T02665
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly00040
Pentose and glucuronate interconversions
sly01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
101267397
Enzymes [BR:
sly01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
101267397
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
101267397
NCBI-ProteinID:
XP_004236768
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Position
4:4128943..4134369
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AA seq
336 aa
AA seq
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MAALPYADVDSSLKALAGRAEGFGRFAIGGLNGPVYSVTTLADDGPGSLRDGCRKKEPLW
IVFEVSGTIPLTSYLRVSSHKTIDGRGQRIILTGKGLQLKDCEHIIVCNLEFEGGRGHDV
DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGADPSHVG
DRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAICASVESQIYSQCNIYEA
SQKKKAFEYYTEKAADKEEARSGLIRSEGDMFLNGAQGSLLTGIGGECVFHPSEFYPVWT
LEPASDSLKGILHICTGWQSVSLPQEECARQLKPAR
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttgccatatgctgatgtcgattcgagcttaaaagctctagccggtcgagcc
gaaggatttggcagatttgcaatcggcggtctaaatggtccggtctattccgtcacaaca
ttggccgatgatggtccgggatcactccgtgatggatgccgtaagaaagaaccactatgg
attgtttttgaagtttcaggcaccattcctctcacgtcttacctacgtgtgtcatcccat
aaaactattgatggtcgtggacaaaggataatactcactggcaaaggcttacagctgaag
gattgtgagcacataatcgtatgcaatttggagtttgaaggtggcagaggtcatgatgtt
gacggcattcagataaaaccaaattccaggcacatttggatagaccgctgttctcttcgt
gattatgatgatgggctaatcgatattaccagacaaagcacagatataactatttctaga
tgttattttgctcagcatgataagacaatgcttattggagcagacccgtctcatgttggt
gatagatgtatcagagtgaccatccaccattgctttttcgatgggacgaggcagaggcaa
cctcgtgttagatttggtaaagttcatctgtacaacaattacactagaaattggggtata
tatgctatttgtgctagtgtagaatcacagatatattctcaatgcaacatatatgaagct
tcacagaagaaaaaagctttcgaatactacacagagaaggcagcagataaggaggaagca
agaagtggtttaatcagatcagaaggggacatgtttctgaatggagctcaagggagtttg
ttaactggtattggtggagagtgtgtttttcatccaagtgaattttaccctgtctggaca
ctggaaccagcctcagactctctcaaaggtattctccacatttgcactggttggcaatct
gtttcccttccacaggaggagtgtgctcgtcaactgaaacccgcacgctag
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