Solanum lycopersicum (tomato): 138337026
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Entry
138337026 CDS
T02665
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138337026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
138337026
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138337026
Spliceosome [BR:
sly03041
]
Complex A
U2 snRNP components
U2 related factors
138337026
Complex B
138337026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Motif
Other DBs
NCBI-GeneID:
138337026
NCBI-ProteinID:
XP_069148379
LinkDB
All DBs
Position
12:68338517..68342824
Genome browser
AA seq
1147 aa
AA seq
DB search
MEELKHKSKREDESKKRHRDKEDRDREKRDREHHHRDKKDREREKSSRYEREKSADRDRD
RDRAKHKDRHSRGDKEREKSSKVRDDDERPRDKVKEREKDKEDREEREREKEREREKERE
REREREKEREREREREKEREREREREKERERERKRDRERREREKERNREKDRHREVYEKG
SDDEVDTKDRERKRRKRDNDDHHKERDRERSSKPNNRLREESTDEVSAEKDQKSREEDLA
EEQRKLDDEMEKRRRRVQEWQELKRKKEESERETLGVDAGAEEPKLGKTWTLDGESDDED
AEGKTGMDIDRDDTGKVMDDENGAGKVVSSSIGSDSPVIQNGGDGLVDDDEIDPLDAFMN
DMVLPEVEKLNKSVVNSLDGENSSMKEKNGPRKEEKPKMSMKKTMGRIIPGEDSDSDYGN
VENDEDPLEEEDDEEFMKRVKKTKAEKLSLVDHSKIEYPPFRKNFYIEVKEISRISAEEV
SAYRKQLELKIHGKDVPKPIKTWHQTGLSSKMLDTIKKLNYEKPMSIQAQALPVIMSGRD
CIGIAKTGSGKTLAFVLPMLRHIKDQPPLMSGDGPIGLIMAPTRELVQQIHSDIKKFARV
MGLTCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA
DRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK
DITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHTQEKCDALFKDLLKHGYPCLSLHG
AKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELELVINYDVPNHYEDYVHRVGRTG
RAGKKGCAITFISEDDARYAPDLLKALQLSEQVVPDDLKALADSFMAKVNQGLEQAHGTG
YGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDLSQQAALAQAA
ALVAASKASMASAATPVSAGHLLPNGGLPVALPGVLGINIPGATAVAVGNGLSVGSNDVT
ARATALAAALNLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGA
AITTRGQYVPPGKVPGFGERKLYLFIEGPTEQSVKRAKAELKRVLEDITMQASSLPGSAQ
PGRYSVV
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggaagagttgaagcacaagtcgaagagagaggacgagtcgaagaagcggcaccgtgat
aaggaggatcgagatcgagagaagagggacagagagcatcatcatcgtgataagaaggat
cgagagagagagaaaagcagtcggtatgaaagggagaaaagtgctgatagagatagagat
agagatagagcaaagcacaaggataggcacagtagaggagataaggagcgtgaaaagagc
agcaaggttcgtgatgatgatgaaagacctagagataaagttaaagagcgagaaaaggat
aaggaagaccgtgaagaacgagagagggagaaagagagggaaagggagaaggagagggaa
cgcgagagggaaagggagaaggagagggaacgcgagagggaaagggagaaggagagggaa
cgcgagagggaaagggagaaggagagggaacgggagaggaagagagatagagagaggaga
gaaagggagaaggagaggaatcgcgaaaaggatagacaccgggaagtatatgaaaagggg
agtgatgacgaagttgatacaaaggatcgtgaaagaaagaggcgaaagagggataatgat
gatcatcataaggagagggatcgtgaaaggagtagcaaaccaaacaacaggctaagggaa
gagagcaccgatgaagtatcagctgaaaaggatcagaagagtcgagaagaggatctagct
gaggagcaaaggaaattagatgacgagatggagaagcgaaggaggagagttcaggaatgg
caagagctaaaaagaaaaaaagaggagtctgagagggagacacttggggttgatgcaggt
gctgaagaacctaagttgggcaagacttggacattggatggtgagtctgatgatgaagat
gctgaggggaaaactggcatggatattgatagggatgatactggcaaggtcatggacgac
gaaaatggagctggcaaggtggttagttctagcattggatctgattcccctgttattcag
aatggcggtgatggtttagttgacgatgatgagattgacccgttggatgcttttatgaac
gatatggttttgcctgaagttgagaagcttaacaaatccgtagtcaatagtttggatggt
gaaaattccagtatgaaagagaaaaatggtccgaggaaggaagaaaagcctaagatgagc
atgaagaaaaccatgggaagaattatcccaggtgaagattcggattcagattatgggaac
gttgagaatgatgaagatcctttggaggaagaagatgatgaagaatttatgaaacgggtg
aagaaaaccaaggcggagaaactatcattggtggatcattcgaagattgaatatcctcct
ttcagaaagaacttctacatagaagttaaggagatttcaagaatcagtgctgaagaggtt
tctgcttacaggaaacaactggaattgaagatccatggcaaggatgttccgaaaccaatc
aaaacatggcatcagacaggactgtcctccaagatgctagacactattaagaaactgaat
tatgagaaacccatgtctattcaagctcaggctctgccagtaattatgagtggccgagat
tgtattgggattgctaagacgggttctggtaaaacactggcatttgtattaccaatgctg
agacatattaaggaccagcctcctctgatgtctggagatggtcctattgggctaataatg
gcccctactagagagcttgtacagcaaattcatagtgatattaagaagtttgcaagagtg
atgggtctcacctgtgtacctgtgtatggaggttctggtgttgctcaacaaattagtgaa
ttgaaacgaggagccgaaattgttgtgtgcactccaggtaggatgattgacatactctgt
acaagtggtgggaagattacaaatctgcgaagagtcacatatttggtcatggatgaagct
gatcggatgtttgatatgggatttgaacctcagatcacaagaattgtccaaaacaccagg
ccagaccgtcaaacagtcctgttctctgcaacttttcctcgtcaggttgaaatactagct
cgtaaagtgttgaacaagcctgttgaaatacaggtaggtggtaggagtgttgtgaacaag
gatataacacaattggttgaggtgaggccagaaagtgatagattcctccggcttcttgag
ttacttggtgaatggtatgaaaaaggtaaaattttaatatttgttcacacacaggagaaa
tgtgatgctttatttaaagatttgctcaagcatggttatccctgtctctcccttcatggg
gctaaggatcagactgatcgtgagtccaccatatccgactttaaaagtaatgtatgtaat
ttgttgattgctactagtatagcagccaggggcttagatgtcaaggagcttgaactggta
atcaattatgatgttccaaaccattatgaggactatgttcatcgtgttgggcggactggt
cgagctggtaagaaaggttgtgccatcacattcatatctgaagatgatgcaagatatgca
cctgatcttctaaaagctttacaattgtcggaacaagttgttccagatgacctgaaagct
cttgctgatagtttcatggcaaaggttaatcagggacttgagcaagcacatgggactggt
tatggtggtagtggttttaaatttaatgaagaagaggatgaagtgagaagagcagccaag
aaagcacaggcaaaggaatatggatttgaggaagataaatcagattcagaggatgaagat
gaaggaattagaaaagcaggtggtgacctctctcagcaggctgctcttgctcaggctgct
gctcttgttgctgcttccaaagcgagtatggcttcagcagcaactccagtttcagctggt
caccttcttcccaatggtggattacctgttgcattgcctggtgtacttggtattaatata
cccggtgcaacagcagttgctgttggaaatggactatcagttggctctaatgatgtgaca
gccagagcaacagcattggcagctgccttgaacttgcagcataacttagcaaagattcag
gccgatgcaatgcctgaacattatgaagcagaattagagattaatgattttcctcaaaat
gctcgttggaaggttacacacaaggagacgttgggtcctatttctgaatggacaggagct
gccatcaccactcgaggacagtatgttccacctggcaaggtaccagggtttggggaaagg
aagctgtacttgttcatcgaaggccccaccgagcaatctgtcaagagagcaaaagcagag
ttaaaacgtgtactggaggacattaccatgcaagcatcatcacttcctggttcggctcaa
ccaggcagatactcagttgtataa
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