Solanum lycopersicum (tomato): 3950478
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Entry
3950478 CDS
T02665
Symbol
rpoB, LyesC2p077
Name
(RefSeq) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
3950478 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
3950478 (rpoB)
03400 DNA repair and recombination proteins [BR:
sly03400
]
3950478 (rpoB)
Enzymes [BR:
sly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
3950478 (rpoB)
Transcription machinery [BR:
sly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
3950478 (rpoB)
DNA repair and recombination proteins [BR:
sly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
3950478 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-GeneID:
3950478
NCBI-ProteinID:
YP_008563080
UniProt:
Q2MIA8
A0A0C5CEA8
LinkDB
All DBs
Position
Pltd:complement(23886..27098)
Genome browser
AA seq
1070 aa
AA seq
DB search
MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLV
EPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYR
IVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVSRKQKISI
LVLSSAMGLNLREILENVCYPEIFLSFLNDKERKKIGSKENSILEFYQQFACVGGDPVFS
ESLCKELQKKFFQQRCELGRIGRRNMNRKLNLDIPQNNTFLLPRDILAAADHLIGLKFGM
GALDDMNHLKNKRIRSVADLLQDQFGLALVRLENVVRGTICGAIRHKLIPTPQNLVTSPP
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGR
ICPIDTSEGINVGLIGSLSIHARIGHWGSLESPFYEISERSTGVRMLYLSPGSDEYYMVA
AGNSLALNRDIQEEQVVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDAN
RALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDSGALAIAEREGRIVYTNTHKILLAGN
GDILSIPLVIYQRSNKNTCMHQKFRVPRGKCIKKGQILADGAATVGGELALGKNVLVAYM
PWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIHTHVTSQGPEKVTNEIPHLEAHLLRNL
DKKGIVMLGSWVETGDILVGKLTPQVVKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG
GRGRVIDVRWIQKRGGSSYNPETIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMP
YLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLV
FSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKIHG
RSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVL
GTTIIGGTIPNPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEA
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgctcggggatggaaatgagggaatatctacaatacctggatttaatcagatacaattt
gaaggattttgtaggttcattgatcaaggtttgacggaagaactttataagtttccaaaa
attgaagatacagatcaagaaattgaatttcaattatttgtggaaacatatcaattggtc
gaacccttgataaaggaaagagatgctgtgtatgaatcactcacatattcttctgaatta
tatgtatccgcgggattaatttggaaaaacagtagggatatgcaagaacaaacaattttt
atcggaaacattcctctaatgaattccctgggaacttctatagtcaatggaatatataga
attgtgatcaatcaaatattgcaaagtcccggtatttattaccgatcagaattggaccat
aacggaatttcggtctataccggcaccataatatcagattggggaggaagatcagaatta
gaaattgatagaaaagcaaggatatgggctcgtgtaagtaggaaacaaaaaatatctatt
ctagttctatcatcagctatgggtttgaatctaagagaaattctagagaatgtttgctat
cctgaaatttttttgtcttttctgaatgataaggagagaaaaaaaattgggtcaaaagaa
aattccattttggagttttatcaacaatttgcttgtgtaggtggcgatccggtattttct
gaatccttatgtaaggaattacaaaagaaattctttcaacaaagatgtgaattaggaagg
attggtcgacgaaatatgaaccgaaaactgaaccttgatataccccagaacaatacattt
ttgttaccacgagatatattggcagccgccgatcatttgattggactgaaatttggaatg
ggtgcacttgacgatatgaatcatttgaaaaataaacgtattcgttctgtagcagatctt
ttacaagatcaattcggattggctctggttcgtttagaaaatgtggttcgggggactata
tgtggagcaattcggcataaattgataccgacacctcagaatttggtaacctcacctcca
ttaacaactacttatgaatcctttttcggtttacacccattatctcaagttttggatcga
actaatccattgacccaaatagttcatgggagaaaattaagttatttgggccctggagga
ctgacaggccgcactgctagttttcggatacgagatatccatcctagtcactatggacgt
atttgcccaattgacacatctgaaggaatcaatgttggacttattggatccttatcaatt
catgcgaggattggtcattggggatctctagaaagccctttttatgaaatttctgagagg
tcaaccggggtacggatgctttatttatcaccaggtagcgatgaatactatatggtagcg
gcaggaaattctttagccttaaatcgggatattcaggaagaacaggttgttccagctaga
taccgtcaagaattcttgactattgcatgggaacaggttcatcttcgaagtatttttcct
tttcaatatttttctattggagcttccctcattccttttatcgaacataatgatgcgaat
cgagctttaatgagttctaatatgcaacgtcaagcagttcctctttctcgctccgagaaa
tgcattgttggaactgggttggaacgacaagcagctctagattcgggggctcttgctata
gccgaacgcgagggaaggatcgtttataccaatactcacaagattcttttagcaggtaat
ggagatattctaagcattccattagttatatatcaacgttccaataaaaatacttgtatg
catcaaaaattccgggttcctcggggtaaatgcattaaaaagggacaaattttagcggat
ggtgctgctacggttggtggcgaacttgctttggggaaaaacgtattagtagcttatatg
ccgtgggagggttacaattctgaagatgcagtacttattagcgagcgtttggtatatgaa
gatatttatacttcttttcacatacggaaatatgaaattcatactcatgtgacaagtcaa
ggccctgaaaaagtaactaatgaaataccacatttagaagcccatttactccgcaattta
gacaaaaaaggaattgttatgctgggatcttgggtagagacgggtgatattttagtaggt
aaattaacaccccaagttgtgaaagaatcttcgtatgccccggaagatagattgttacga
gctatacttggtattcaggtatctacttcaaaagaaacttgtctaaaattacctataggt
ggcaggggtcgggttattgatgtgaggtggatccagaaaaggggtggttctagttataat
cccgaaacgattcgtgtatatatttcacagaaacgtgaaatcaaagtaggcgataaagta
gctggaagacacggaaataaaggtatcatttccaaaattttgcctagacaagatatgcct
tatttacaagatggaagatccgttgatatggtctttaacccattaggagtaccttcacga
atgaatgtcggacagatatttgaatgttcactagggttagcagggagtctgctagacaga
cattatcgaatagcaccgtttgatgagagatatgaacaagaagcttcgagaaaactagtg
ttttctgaattatatgaagccagtaagcaaacagcgaatccatgggtatttgaacccgaa
tatccaggaaaaagcagaatatttgatggaaggacggggaatccttttgaacaacccgtt
ataataggaaagccttatatcttgaaattaattcatcaagttgatgataaaatccatggc
cgttccagtggacattatgcgcttgttacacaacaaccccttagaggaagagccaaacag
gggggacagcgggtaggagaaatggaggtttgggctctagaagggtttggggttgctcat
attttacaagagatgcttacttataaatcggatcatattagagctcgccaggaagtactt
ggtactacgatcattgggggaacaatacctaatcccgaagatgctccagaatcttttcga
ttgctcgttcgagaactacgatctttagctctggaactgaatcatttccttgtatctgag
aagaacttccagattaataggaaggaagcttaa
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integrated database retrieval system
