Sulfurovum mangrovi: LN246_00800
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Entry
LN246_00800 CDS
T09512
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smab
Sulfurovum mangrovi
Pathway
smab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LN246_00800 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smab03021
]
LN246_00800 (rpoC)
03400 DNA repair and recombination proteins [BR:
smab03400
]
LN246_00800 (rpoC)
Enzymes [BR:
smab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LN246_00800 (rpoC)
Transcription machinery [BR:
smab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LN246_00800 (rpoC)
DNA repair and recombination proteins [BR:
smab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LN246_00800 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UFH59402
LinkDB
All DBs
Position
147656..152188
Genome browser
AA seq
1510 aa
AA seq
DB search
MSKQLENLIPIDLNSEERPSDIEAFQLRVASPEKVLSWSYGEVKKPETINYRTLKPERDG
LFCAKIFGPIRDYECLCGKYKKMRYKGVVCEKCGVEVTTSKVRRSRMGHIDLVAPVAHIW
YVSSLPSRIGTLLGVKMKDLERVLYYEAYIVKTPGGASYDSEGLSPLAKYDVLNEEQYQQ
IMQRFSDTDLDARMGGEIIQELLADLDLVEMYNQLKEEIQATRSEAKRKTIVKRLKVIES
FLHSGNRPEWMMLTQLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNQRLKRLIELD
APEIIVRNEKRMLQESVDALFDNGRRGNAVKGANKRPLKSLSEVIKGKQGRFRQNLLGKR
VDFSGRSVIVVGPDLRMDQCGLPKKMAIELFKPHLMAKLEEKGYATTLKQAKKMIEKQEN
EVWECLEEVVENYPVLLNRAPTLHKLSIQAFHPRLIEGKAIQLHPLVCAAFNADFDGDQM
AVHVPLSDEAVAEAKVLMLASMNILLPASGKAIAVPSQDMILGLYYLTLEKNDVKGEHKL
FANVEEVEIAFEQQSLDLNARIRTVVEGRITTSTAGRLILKSIIPDYVPEKYWNKILKKK
DIGALVDYIYKIGGVAETATFLDNLKDMGFKYATKVGVSISVEDIKIPELKEELVKAATE
DVKEIQRQYGAGLLTDQERYNKIIDIWTDANNGIAEGLMAKIRADKDGFNSVHMMADSGA
RGSAAQIRQLSGMRGLMAKSDGSIIETPITSNFREGLNVLEYFISTHGARKGLADTALKT
ANAGYLTRKLIDVAQNVKIVMNDCGTHEGVEVSDIVVGNEMIEPLADRIYGRVLAQDVID
PITSEVLLSEGTLIDEEMAQRVQDAGVRSVVMRAPSSCKAPKGICAKCYGLNMADNKIVK
RGEAVGVIAAQSIGEPGTQLTLRTFHTGGTATAGKEERQIVATKEGFIRYYNLSVYRNTE
DKLIVANRRNAGVLLVEPKIKATVSGKVKIQITHDEYVISVAADGQDEIKYNLRKSDVAK
SNELAGVAGKIEGKFFLPFEDGDMVQEGDSIVDMINEGWSVPSRIPFASELKVENGAPVT
QKVISESRGTVKFFLLKGDYLEAHPDSKEGDAVTQKGLFAVVVDENNREAGRHYISRGSK
LQVSNDQKVERGDLLSAPEVIEQTVVAEWDPYSEPIIAEQKGTLKFEDIIPGVTVIEQFD
EVTGESRLELNEYIPAAYKPAIILATESGEIIRYQLDPKTILFVQDGAEVSTADILAKTP
KAAIKSSDITGGLPRVSELFEARRPKDIALIAQIDGVVSFGKPLRGKQRLIITGEGDQIT
EQFIDKNKTALVHAGDYVHAGEKLTDGTISSHDILAALGEKALYEYIVSEVQMVYRRQGV
NISDKHIEIVTSQMMRQVKVVDSGDSKFIAGDIVSRRKFQEENQSVLKLGGEPAIAEPLL
VGITRSAVGADSIISAASFQDTTKVLTSASIAGTVDALEDLKENVVIGRLIPVGTGMVDI
DNITFSTSAE
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagcaactagaaaatttaataccgatagatctgaacagtgaagagagaccgagt
gatatcgaagcctttcaactgagagtagcgagtcctgagaaggttctttcttggagttac
ggtgaggttaaaaaacctgagacgatcaactatagaacactaaagcctgaacgtgacggg
cttttctgtgcaaaaatcttcggaccgatccgtgactacgagtgtctgtgcggtaagtac
aagaagatgcgttacaaaggtgtggtttgtgaaaagtgtggtgttgaagttacgacatct
aaagtaagaagaagcagaatggggcacattgacctcgttgcaccggttgcacatatctgg
tatgtctcttcacttccttcacgtatcggtacactgcttggtgtgaagatgaaagacctt
gagcgtgtactctactacgaagcatatatcgtaaaaacaccgggtggtgcaagttacgac
agtgaaggacttagcccgctggcgaagtacgatgtgcttaacgaagagcagtaccagcag
atcatgcagcgtttttctgatacagatctggatgcacgtatgggtggtgagatcattcaa
gagcttctagcagaccttgacctcgtagagatgtacaaccagcttaaagaagagatccag
gcaacaagatcagaagcaaagagaaaaacgatcgtaaaaagattgaaagtgatcgagtca
ttcctgcattcaggaaacagaccggaatggatgatgcttactcagcttccggtacttcca
cctgacctaagaccgcttgtaagtcttgacggcggtaagtttgcggtatcggatgtaaat
gacctctatagaagagtcatcaacagaaaccagcgtttgaaaagattgatcgaacttgat
gcaccagagattatcgttagaaacgaaaagcgtatgcttcaagagtctgtggatgcgctt
tttgataacggtagaagaggaaatgcagtaaaaggtgcgaacaaaagaccattgaaatca
ctctctgaagtgatcaaaggtaagcagggtcgtttccgtcagaaccttctcggtaaaagg
gttgacttctccggacgttcggttatcgttgtcggtccggacctccgtatggaccagtgt
ggtcttccgaagaagatggcgatcgagctctttaaaccgcacttgatggcgaagcttgaa
gagaaagggtatgcaacgacccttaaacaagcgaagaagatgatcgagaaacaggagaac
gaagtatgggagtgtctggaagaggttgttgagaactatcctgttcttcttaaccgtgca
ccgacacttcacaaactttcgatccaggcgttccacccaagattgatcgaaggtaaagcg
attcagcttcacccgcttgtttgtgcggcattcaacgccgacttcgatggtgaccagatg
gcagtacacgtgccgctttcagatgaagcagtagccgaagcgaaagtcttgatgcttgct
tcaatgaacattttgcttcctgcatcaggtaaagcgatcgccgtaccgtctcaggatatg
attttgggtctttactacctgacacttgagaaaaatgatgtcaaaggtgagcacaaactc
tttgcgaacgtagaagaggttgagatcgcatttgaacagcagtcccttgacctgaatgca
cgtatcagaactgtggtagagggtcgtatcacgacatcgactgcaggtagattgatcctg
aaatcgatcattcctgactatgtacctgaaaagtactggaacaagattcttaagaaaaaa
gatatcggtgcgcttgttgactatatctacaagatcggcggggttgcagagactgcaaca
ttcctggataatcttaaggatatgggtttcaaatatgcaacgaaagtcggtgtatcgatc
tctgttgaagatatcaagatccctgagctgaaagaggaacttgtaaaggccgctactgaa
gatgtaaaagagatccagagacagtatggtgcgggtcttttgactgatcaagagcgttat
aacaagattatcgatatctggacggatgcgaacaacggtatcgctgaaggacttatggcg
aagatcagagccgataaagacggattcaactcagttcacatgatggctgactctggtgcg
aggggttctgccgctcagatcagacagctttcaggtatgaggggtctaatggcgaaatcg
gacggatcgatcattgagacaccgattacttcaaacttccgtgaaggtctgaacgtactt
gagtactttatttcaacacacggtgcgagaaaaggtcttgccgatacagcacttaagaca
gcgaacgcaggttacttgacaagaaaactgatcgatgttgcacaaaacgtgaagatcgtg
atgaatgactgtggtacacacgaaggtgtggaagtatctgatatcgttgtgggtaacgag
atgatcgaaccattggcagatcgtatctacggtagagtattggctcaggatgtgattgat
cctattacctctgaagtactgctttctgagggaacattgattgatgaagagatggctcag
cgtgttcaggatgcgggagttagatcggtagttatgagagctccgtcatcatgtaaagca
ccgaaaggtatctgtgcgaagtgttatggtctgaacatggcagataacaagatcgtaaaa
cgtggtgaagcagtcggtgttatcgcagcacaatcgatcggtgagccgggtacacagctt
acactacgtacattccacaccggtggtacggcgacagcaggtaaggaagagagacaaatc
gtagcgacgaaagaaggtttcatccgttactataacctttcagtttatagaaatactgaa
gataaattgatcgttgcaaacagaagaaatgccggtgtacttttggttgagccaaaaatc
aaagcgacggtttcaggtaaagtgaagatccagattacacacgacgagtatgtcatctct
gtagcggctgatggtcaggatgagatcaaatacaacctaagaaagtctgatgtagcaaaa
tcaaacgaacttgcaggggttgcaggtaagatcgaagggaaattcttccttccgtttgaa
gacggtgatatggtacaagagggtgactctattgttgatatgatcaatgaaggttggtct
gtaccgtcacgtatcccgtttgcttcagagcttaaagtggaaaatggtgcacctgtgaca
caaaaagtgatctctgaatcacgcggtacggtgaagttcttcctgcttaaaggagattac
cttgaagcacatcctgacagtaaagagggtgatgcagtgacgcaaaaaggtctctttgct
gtggttgtcgatgagaacaacagggaagcgggaagacactatatctcaagaggatcgaag
cttcaggtatcgaatgatcagaaagtggaaagaggagatctcctctctgctcctgaagtg
atcgagcagacggtagtggcagagtgggatccatactcagagccgatcatcgcagagcaa
aaaggtacgttgaagtttgaagatatcatccctggtgttacagttatcgagcagttcgat
gaagtaacaggagagtcaagacttgagttgaatgaatatatcccggcggcttataaaccg
gcgatcattcttgcaacagaatcaggagagatcatccgttatcagcttgatcctaagaca
atcctatttgttcaggatggtgcagaagtaagtacggcagatatccttgctaaaacgcca
aaagcggcgatcaaatcaagcgatattaccgggggtcttccaagagtatctgaactcttt
gaagcaagacgtccaaaagatatcgccttgatcgcacagattgacggtgtggtaagcttc
ggtaaaccgctacgtggtaaacaaagacttatcattacaggtgagggtgatcagatcact
gagcagttcattgataagaataaaactgcattggtgcatgcgggagattatgtacacgca
ggtgagaaattgactgacggtacgatctcaagccatgatatccttgcagcacttggtgag
aaagcgctttatgagtacattgtctctgaagtacaaatggtttaccgccgtcaaggggtt
aacatctcagataaacacattgagattgtaacgtcacaaatgatgcgtcaggtgaaagtt
gtagacagtggtgacagtaaattcatcgctggagatattgtatccagacgtaagttccag
gaagagaaccagagtgtgcttaaacttggcggtgaaccggcaattgctgagccgttgctt
gtaggtattacgcgttcagcggttggtgcagactctatcatctcggcagcatcgttccag
gatactacgaaagtactgacttcagcttctatcgccggtacggtagatgcattggaagat
ctgaaagagaacgtggttatcggtcgtttgatccctgtggggacaggtatggtcgatatc
gacaatatcacattcagtacatcagcagagtag
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integrated database retrieval system
