Serratia marcescens subsp. marcescens Db11: SMDB11_1170
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Entry
SMDB11_1170 CDS
T03985
Symbol
holB
Name
(GenBank) DNA polymerase III, delta prime subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
smac
Serratia marcescens subsp. marcescens Db11
Pathway
smac03030
DNA replication
smac03430
Mismatch repair
smac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SMDB11_1170 (holB)
03430 Mismatch repair
SMDB11_1170 (holB)
03440 Homologous recombination
SMDB11_1170 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smac03032
]
SMDB11_1170 (holB)
03400 DNA repair and recombination proteins [BR:
smac03400
]
SMDB11_1170 (holB)
Enzymes [BR:
smac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SMDB11_1170 (holB)
DNA replication proteins [BR:
smac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SMDB11_1170 (holB)
DNA repair and recombination proteins [BR:
smac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SMDB11_1170 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNApol3-delta_C
DNA_pol3_delta2
HolB_lid
Motif
Other DBs
NCBI-ProteinID:
CDG11746
LinkDB
All DBs
Position
1235248..1236255
Genome browser
AA seq
335 aa
AA seq
DB search
MNWYPWLNGPYRQLIGQYADGRGHHALLLHAAAGNGDDALAYGLSRWLICQQRNGEKSCG
ECHSCRLMLAGNHPDYHVLAPEKGKSNLGIEPIRQVIETLYAHAQQGGAKVIWLPQAEQL
TEAAANALLKTLEEPPEKTYFLLGCREPSRLMATLRSRCLYWHLASPDEQLSLQWLGRQA
AGSQTDRLTALRLHDGAPLAAEQLLQPQQWQQRSALCTALSAALPQRDMLSLLPVLNHED
VAERLHWLCALLVDAMKWQQGAHHYVLNQDQQPLVHQLASVLSSASLQQIVQQWLTCRHQ
LLSVVGVNRELLLTEQLLRWEQMLGAAGYSHPHSL
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgaactggtacccgtggctgaatggcccttatcgccagctgattgggcagtacgccgac
ggtcgcggccaccatgcgctgctgctgcatgcggcggcgggcaatggtgacgatgcgctg
gcctacggcctgagccgttggttgatctgccaacagcgcaacggcgaaaaaagctgcggc
gagtgccacagctgccggctgatgctggcggggaatcacccggattatcacgtgctggcg
ccggaaaagggcaagagcaacctgggtatcgaaccgatccgccaggtgattgaaacgctg
tacgcccacgcgcagcagggcggcgccaaggtgatttggctgccgcaggcggaacagttg
accgaggcggcggccaacgcactgcttaaaacgctggaagagccgccggagaaaacctat
tttctgctgggttgccgtgagccgtcgcggctgatggcgacgctgcgcagccgctgtctt
tattggcatttggccagcccggatgagcagctcagcctgcagtggctgggccggcaggcg
gccggttctcagacagaccgcctcacggcgctgcgcctgcacgacggcgcgccgctggcc
gccgaacagctgttacagccgcagcagtggcaacagcgcagcgccctgtgcaccgcgttg
agcgccgcgctgccgcagcgcgatatgctgtcgctgttgccggtgctgaaccatgaagat
gtcgccgagcgcctgcactggttgtgcgcgctgttggtggacgcgatgaagtggcagcag
ggcgcgcatcactatgtattgaatcaggatcagcaaccactggtgcatcagctggccagc
gtgctgagcagcgcctcgctgcagcagatcgtgcagcagtggctgacctgccgccatcag
ctgctcagcgtggtgggtgtcaatcgcgagctgctgctgaccgaacagttacttcgctgg
gaacagatgcttggcgccgccggctattcccaccctcattcgctgtaa
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