Solibaculum mannosilyticum: C12CBH8_17190
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Entry
C12CBH8_17190 CDS
T07247
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sman
Solibaculum mannosilyticum
Pathway
sman03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sman00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C12CBH8_17190 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sman03021
]
C12CBH8_17190 (rpoC)
03400 DNA repair and recombination proteins [BR:
sman03400
]
C12CBH8_17190 (rpoC)
Enzymes [BR:
sman01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C12CBH8_17190 (rpoC)
Transcription machinery [BR:
sman03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C12CBH8_17190 (rpoC)
DNA repair and recombination proteins [BR:
sman03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C12CBH8_17190 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BCI61080
UniProt:
A0A7I8D2M5
LinkDB
All DBs
Position
complement(1880108..1883653)
Genome browser
AA seq
1181 aa
AA seq
DB search
MEFNVFESIKIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFCERIFGPTKDWECH
CGKYKRIRFKGKICDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDLS
PRLLEKVLYFASYIVTDPGTTPLEKMQLLNEKEYRDMRERYEDDFKAGMGAEAIRDLLAE
IDLEKLSVELKEELENASGQKRVRILKRLEVVEAFRQSNNRPEWMILEAVPVIPPDIRPM
VQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGRR
GRPVTGPNNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKEM
AIELFKPFVMKRLVETGAAGNIKSARKMVERARGEVWDALETVIKEHPVLLNRAPTLHRL
GIQAFEPVLVEGRAIKLHPLVCTAYNADFDGDQMAIHVPLSAEAQAEARFLMLAANNLLK
PSDGRPVCVPTQDMVLGSYYLTLVKPGEKGEGKVFRDFNEARMAYDTGVVGLHAAIKVRR
TVEVDGKPVTGLIDTTVGRIIFNGPIPQDLGFVERKKPEDYLQLEVSFLVKKKQLGQIID
HCIKVHGVSRTSEVLDDIKAQGFKYSTRGALTVAVVDATIPEEKKEILAATEAKIDKVAK
KFRRGLLSNEERSRQVTAAWNDATAQVTAALEQHLDTVNNPIAMMADSGARGSISQIRQL
AGMRGLIANTSGKVIEVPIRSNYREGLNVQEYFIASRGARKGLADTALRTADSGYLTRRL
VDVSQDVIIREQDCHTHNGIEVFDIREGNQIIEPMAARLVGRYLAEPFVDQETGEVLVSR
DKLMDDKDAAIIVNSGVKSVRIRSLLTCEAKHGVCVKCYGSNLATGQPVTVGEAVGIIAA
QSIGEPGTQLTMRTFHTGGIASAEDITQGLPRVEELFEGRKPKHLAIISEIPGVVRFEEI
KKNRHVVVTDPETKDEKSYLIPFGSRLKVQEGDVLRAGDMLTEGSVNPHDVLAIQGTDAV
HNYIIQEVQKVYRLQGVDINDKHIEVIVRQMMRKVKIDKSGSTTLLPGSMVDKSEFIAVN
EEIERRIQNGEEGLEKATCIPTLLGITKASLATESFLSAASFQETTRVLTEAAIKGKVDP
LVGLKENVIIGKLIPAGTGMKCYTDVEAIPIGEGLTEEHAI
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaatgtatttgaatcgattaaaataggcttggcctctcccgataagatcaga
agctggtcctacggcgaggtcaaaaagccggaaaccatcaactaccgcacgctcaagccg
gaacgggacggtttgttctgtgagcgcatctttggccccactaaggactgggagtgtcac
tgcggtaaatataaacgcatccgttttaaaggcaagatctgcgaccgctgcggcgttgag
gtcaccaaagccaaggtgcgccgtgaacgtatgggccacatcgaactggctgctccggtt
tcgcacatctggtattttaaaggcatcccctcccgtatgggcctgattttggatttgtcc
ccccgcctgctggagaaggttttgtactttgcctcctacattgtgaccgatccaggcacc
actcccttggagaagatgcagcttctcaacgaaaaagaataccgggatatgagggaacgg
tatgaggacgatttcaaagccgggatgggcgccgaggccatccgggatctgctggcagag
atcgatctggaaaagctgtcggtggagctcaaggaagaactcgaaaatgcatcggggcaa
aaacgtgtccgcattctcaagcgcttggaggtcgtggaggcattccgccagtccaataac
cgtccggaatggatgatcctggaggctgtcccggttattccgccggatatccgccccatg
gtacagttggacggcggccgttttgccacctccgacttaaacgatctgtaccgccgcgtc
atcaaccgcaacaaccgtcttaagagactgttggagcttggcgcgcctgatatcattgtg
cgcaacgaaaagcgcatgctgcaagaggctgtggacgccctcatcgacaacggccgccgc
ggccgtccggtgaccggccccaacaaccgtcctcttaagtccttgtccgacatgctcaaa
ggtaaacagggacgtttccgtcagaacctgctgggtaagcgcgtggactactccggacgt
tcggttatcgtcgtcggccctgagctgaagatgtaccagtgcggtctgcccaaggagatg
gccatcgaactgtttaagcctttcgtcatgaagagattggtggaaaccggcgctgccggc
aacatcaaatcggcccgcaagatggtggagcgtgcccgcggagaagtgtgggatgcgtta
gaaaccgtcatcaaggagcatccggtgctgttgaaccgcgcacctaccctgcatcgcctg
ggtatccaggctttcgaaccggtgttggttgagggccgcgccatcaaattgcatccgctg
gtttgtaccgcatacaacgccgacttcgacggcgaccagatggccattcacgtgccgctg
tcggccgaggcccaggctgaagcccgcttcctgatgttggccgccaacaacctgttgaaa
ccttccgatggacgtccggtgtgcgttcccacccaggatatggtgcttggttcctactac
ctgaccctggtgaagcccggcgaaaagggcgagggcaaggtgttccgcgactttaacgaa
gctcgcatggcttatgacaccggcgtagtcggtctgcatgccgctatcaaggtccgccgc
acggtggaagtggacggcaagcctgtaaccggactgatcgataccactgtcggacgtatc
attttcaacggccctatcccgcaggacctgggctttgtagaacgcaagaagccggaggat
tatctccagttggaggtctccttcctggttaagaaaaagcagctgggtcagatcatcgac
cactgcattaaggtacatggcgtatcccgtacctctgaagtgttggacgacatcaaggct
caaggctttaaatattccacccgcggcgctttgaccgtggctgttgtggacgctacgatc
cctgaggagaaaaaggaaatcctggccgctaccgaagccaagatcgacaaggtggccaag
aaattccgccgaggcctcctctccaatgaagagcgttcccgtcaggttaccgccgcgtgg
aacgacgccaccgctcaggttaccgctgctctggaacagcatctggacaccgtcaacaac
cccatcgccatgatggccgactccggtgcccgtggttccatcagccagattcgtcagctg
gccggtatgcgcggtctgatcgccaatacctccggtaaggttatcgaagtcccgattcgt
tccaactaccgcgaaggcctcaacgttcaggagtactttatcgcctcccgcggcgcccgt
aaaggtttggccgacaccgctctgcgtaccgccgactcgggttatctgacccgccgtctg
gtagacgtttcgcaggatgtcatcatccgcgagcaggattgccatacccacaacggcatc
gaagtatttgacatccgggaaggcaatcagatcatcgagccgatggcagcccgtctggtg
ggacgctatctggccgaaccctttgtggatcaagagaccggcgaggtgctggtttcccgc
gataaattgatggatgacaaagacgccgccattatcgtcaattccggcgtcaagagtgtc
cgtatccgttccctgctcacttgcgaagccaagcacggcgtttgtgtcaagtgctacggt
tccaacctggccactggtcagccggtcaccgtgggcgaggccgtcggcatcatcgccgcc
cagtccatcggcgaacccggtacccagctcaccatgcgtaccttccataccggcggtatc
gcatcggctgaggatatcacccagggtcttccccgcgttgaggaactgtttgaaggccgt
aaacccaaacatctggccattatttccgagatccccggcgttgtccgcttcgaggagatc
aagaaaaaccgccatgtggtggtcaccgatcccgagaccaaggatgaaaaatcctatctt
attcctttcggttcccgtctcaaggtccaggagggcgacgtcctccgcgccggcgacatg
ttgaccgaaggctcagtcaatccccatgacgtcctggccatccagggcaccgacgccgtc
cacaactacatcatccaggaagtccagaaggtttaccgtctccagggcgttgacatcaac
gacaagcacattgaggttatcgtccgccagatgatgcgcaaggtcaagatcgataagtcc
ggcagcaccacgctgcttcccggctccatggtggataagagcgagtttatcgccgtcaac
gaagagattgaacgccgcatccagaacggggaagagggcctggagaaagccacctgcatc
cccaccctgctgggtattaccaaggcatcgttggcaaccgaatccttcctgtcggccgcc
tccttccaggagaccacccgcgtcctcaccgaagccgccatcaaaggcaaggtggatccg
ctggtcggcctgaaggaaaatgtcatcatcggtaagctgattcccgccggtacaggtatg
aaatgctacaccgacgtggaggccatcccgatcggtgaagggttgacagaagagcatgca
atatga
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