Candidatus Sulfurimonas marisnigri: HUE87_01520
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Entry
HUE87_01520 CDS
T07564
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
smas
Candidatus Sulfurimonas marisnigri
Pathway
smas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HUE87_01520 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smas03021
]
HUE87_01520 (rpoB)
03400 DNA repair and recombination proteins [BR:
smas03400
]
HUE87_01520 (rpoB)
Enzymes [BR:
smas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HUE87_01520 (rpoB)
Transcription machinery [BR:
smas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HUE87_01520 (rpoB)
DNA repair and recombination proteins [BR:
smas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HUE87_01520 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QOY54951
UniProt:
A0A7S7M0N1
LinkDB
All DBs
Position
277729..281874
Genome browser
AA seq
1381 aa
AA seq
DB search
MLNTLYSGNRLRVDFSKTPQQIEVPNLLQLQQSSYNKFLMLDDKDRSDSGVETVFQSVFP
IHDTQNRLTIEYIGSEVGKPKYTVRECMERGLTYAVSLRMKTRLVLWDRDENTKEKLGVK
DIKEQSIFVRDIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESTTSGNKLIYTGQI
IPDRGSWLYFEYDPKDILYMRINKRRKVPVTIMFRALGYSKQDILKLFYPIQTINIVDNK
FSMSFNPSDYGTRLSYDLVDTNGQILVASGKRLSANKAQKFLDDGLKEVEYPLEILLDRN
IAEPIIDPETGEILFDTMTRIDESKLKKMAELGVSNFKIANDLAEGVDGSIINAFNADAD
SLKLLKQTENIEDENDLSAIRIYKVMRPGEPVTKEAAKTFVNQLFFDPERYDLTKVGRMK
MNHKLGLTIPEYVTVLTHEDVIESVKYVIKVKNGQGHIDDRDHLGNRRIRSIGELLGNEL
HNGLVKMQKAIRDKLSTMSGPMSELMPHDLINSKMITSTIMEFFSGGQLSQFMDQTNPLS
EVTHKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPVETPEGQNIGLINTLATYSKVN
EHGFIEAPYKVMKDGKVTSEIIYLTATQEEGKKIAAASNKYDEDGQFIDTLITTRMDGEI
LLRPSIECEYADLSSSMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLRPLAPIVGT
GVEKLVARDSWECVKAKRSGIVEKVDGKHIYVMGDDDGEIYIDYYPLQKNLRTNQNTSFA
QKPIVNVGERVEKDQIIADGPNMDQGELALGVNAMVAFMPWNGYNFEDAIVISERLIRKD
AFTSVHIYEKEVEARELKHGVEEITRDIPNVRDDELSHLDESGIVKIGTSVSGGMILVGK
VSPKGEVKPTPEERLLRAIFGEKAGHVINKSLYCPPSMEGVVVDVKIFTKKGYDKDPRAL
ELEKEERDYLEREHYDRLLMIDKEEMLRVTKLLTKEALVSDIKIGDTDYKAGDIINGNDL
VEVNRFAMNAIIKSFSEAIQDEYNKTKNYFQKEKRLFRDEHEEKLTILEKDDILPNGVVK
YVKVYIATKRQLKVGDKMAGRHGNKGIVSIIVPEVDMPYMEDGRSVDVCLNPLGVPSRMN
IGQILEMHLGMAGRELGNQILEQFETKQKDFIQNLRSKMISIADIAGMMNAVKVIGEMSD
EKFLKYARDWSNGVRFATPIFEGVNVAEFEKLFELAKMDSDGKVVLYNGLTGEKIKERVN
VGYMYILKLHHLVDEKIHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGASAV
LKEMLTIKSDDVDGRVRAYKAITKGELVPPSGIPETLFVLTKELQSLALDVELFDEVEDD
E
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacactttatactccggaaatcgtcttcgtgtagacttctctaaaactcctcaa
cagatagaagtaccaaatttattacaacttcaacaaagttcgtacaataaatttttaatg
ctagatgataaagatagatcagatagcggtgttgagacagtatttcagtcagttttccca
attcatgacactcaaaatagacttactatagaatatattggttcagaagttggtaaacct
aaatatacagttagagagtgcatggaacgtggtcttacttatgctgtatcattaagaatg
aaaacacgtcttgtgctttgggacagagatgaaaatacaaaagaaaaattaggggttaaa
gatatcaaagaacaaagtatttttgttcgtgatattccgctaatgacagaaagaacatct
tttattattaatggtgttgagagggttgttgttaatcaacttcaccgctcacctggtgta
atttttaaagaagaagagtctactacttcaggaaataaacttatttatactggacagatt
attcctgatcgcggatcatggttgtattttgagtatgaccctaaagatattttatatatg
agaattaataagcgccgtaaagttcctgtaactattatgttccgtgcacttggttactct
aaacaagatattctaaaactgttttaccctattcaaacaattaatattgtagataataaa
ttctcaatgagcttcaatccaagtgattatggaacaagattgagttatgatttagttgat
actaatggtcaaattctagtagcatctgggaaaagattatcagctaacaaagcacaaaaa
ttccttgatgacggccttaaagaagttgaatatccacttgagattttacttgatcgtaat
atcgctgagcctattattgatcctgaaacaggtgaaattctttttgacactatgactcgt
attgatgagagcaaacttaaaaagatggctgaattaggcgtaagtaattttaaaattgcg
aatgacttagctgaaggtgtggatggttctattattaacgcatttaatgctgatgctgat
tcacttaaattactaaaacaaactgaaaatattgaagatgagaatgatctttctgctatt
cgtatttataaagttatgagaccaggagaacctgtaaccaaagaggctgctaaaactttt
gttaatcaacttttctttgatccagagagatatgacctaactaaagttggtcgtatgaaa
atgaatcataaacttggtcttactattcctgaatatgtgactgttttaactcatgaagat
gttattgagtctgtaaaatatgtaataaaagtaaaaaatggtcaaggtcacattgatgat
agagatcacttaggtaatcgtcgtattcgttctattggtgaacttttaggaaatgaatta
cataatggtttagttaaaatgcaaaaagctattcgtgacaagttgtctacgatgagtgga
cctatgtctgagctaatgcctcatgatttaattaactcaaaaatgataacttcaacaatt
atggagtttttctctggtggacagctttcacaattcatggatcaaaccaatccactatct
gaagttactcacaagcgtcgtctttctgcattgggagagggtggtttagttaaagaacgt
gctggttttgaagttcgtgatgttcatccaactcactatgggagaatatgtccagttgag
actccagagggtcaaaatattggtcttatcaatactttagcaacttactcaaaagttaat
gagcatggatttattgaagcaccatataaagtaatgaaagatggcaaagtgacatctgaa
attatttatctgactgctactcaagaagagggtaaaaagattgctgctgcatcaaataaa
tatgatgaagatggtcaatttatagataccttaattacaacaagaatggatggtgagatt
ttacttcgtccatctattgagtgtgagtatgctgacttgtcatcaagcatggttgttggt
gttgcagcttctcttattccattcttagagcatgatgatgccaatcgtgcattaatgggt
tcaaacatgcaacgccaagctgtcccacttttgagaccacttgcgcctattgtaggaaca
ggtgttgaaaagcttgttgcgagagactcttgggagtgtgtgaaagctaaacgttctggt
attgttgaaaaagtggatggaaaacatatttatgttatgggagacgatgatggagaaata
tatatagattactacccattacaaaaaaatcttcgtactaaccaaaatacttcttttgct
caaaaaccaattgttaatgttggtgaaagagttgagaaagaccaaataatcgcagatggt
ccaaatatggatcaaggtgaattggcacttggtgttaatgcaatggttgcatttatgcct
tggaatggttataactttgaggatgcaatcgtaatctcagagagacttatacgtaaggat
gcttttacatctgttcatatttatgaaaaagaagttgaagcgagagagcttaagcatggg
gtagaagagattactcgtgatattccaaatgttagagatgatgagttgtctcacttggat
gaaagcggtattgttaaaataggtacatcagtttctggcggtatgattttagttggtaaa
gtttctccaaaaggggaagttaaaccaactccagaagagcgtcttcttcgtgcaattttt
ggtgaaaaagctggtcatgttataaataagtcactttactgccctccaagtatggaaggt
gttgttgttgatgttaaaatctttacaaaaaaaggttacgacaaagatcctcgtgcacta
gagcttgaaaaagaagagcgtgactacttagagcgtgaacactatgatagactgcttatg
atagacaaagaggaaatgttaagagttactaaacttttaactaaagaggctttagtttct
gatattaaaataggtgatactgattacaaagctggagatattatcaatggtaatgattta
gttgaagtaaaccgctttgctatgaatgcaattattaagtcattcagcgaagcgattcag
gatgagtataataaaactaaaaactattttcaaaaagagaaaagacttttccgtgatgaa
catgaagagaaactgactattttagaaaaagatgacattttacctaatggtgttgttaag
tatgtaaaagtttatatagctactaagcgtcaactaaaagttggtgataaaatggctggt
cgtcacggaaataaaggtattgtttcaataatcgtaccagaagttgatatgccgtatatg
gaagatggaagaagtgttgatgtttgtctaaatccacttggtgttccttctcgtatgaat
attggtcaaatcttagagatgcacttaggtatggcaggacgtgagcttggtaaccagatt
ttagaacagtttgagactaaacaaaaagattttatacaaaatcttcgctcaaaaatgata
tctattgctgatattgccggtatgatgaacgctgttaaagttatcggcgagatgagtgat
gagaaatttctaaaatatgctcgtgactggtcaaatggtgtaagatttgcaactccgatt
ttcgaaggtgttaatgttgccgaatttgaaaaattgtttgaactggctaaaatggatagt
gatggtaaagttgtactttataatggcttgacgggagagaagataaaagagcgtgttaat
gtaggttacatgtatattcttaaacttcatcaccttgttgatgagaaaattcatgctcgt
tcaactggaccatactctttagtaactcaacagccagttggtggtaaagcactatttggt
ggacagagatttggagagatggaagtttgggctcttgaagcctatggagcttctgcagtt
ttaaaagagatgttaactattaagtctgatgatgttgatggccgtgttcgtgcatataag
gcaatcactaaaggtgaattagtgccaccttctggtattccagagacactatttgtatta
accaaagagcttcaatcattagctcttgatgtagaattatttgacgaggttgaagacgat
gagtaa
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