Sphingomicrobium maritimum: WJT74_07590
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Entry
WJT74_07590 CDS
T11086
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
smat Sphingomicrobium maritimum
Pathway
smat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WJT74_07590 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smat03021
]
WJT74_07590 (rpoB)
03400 DNA repair and recombination proteins [BR:
smat03400
]
WJT74_07590 (rpoB)
Enzymes [BR:
smat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WJT74_07590 (rpoB)
Transcription machinery [BR:
smat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WJT74_07590 (rpoB)
DNA repair and recombination proteins [BR:
smat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WJT74_07590 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
XAM20781
LinkDB
All DBs
Position
1487159..1491337
Genome browser
AA seq
1392 aa
AA seq
DB search
MATQSKDVPTTQGRSLKSRRIRKIFGNIHEVSEMPNLIEVQRESYEDFLRSDKQRDYVSG
LEKTLRSVFPIQDFAGTAHLDFDGYELEKPKYDTEECRQRGLTYAAPMRVTLRLTSFEID
PDTEAKSVIDIKEQDVYMGDMPLMTENGTFIINGTERVIVSQMHRSPGVLFDHDRGKTHA
SGKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTTLLYALGLNHEEIFEHFYD
RVTWKRGKQGWELPFRSEAWRGLKPTYDLVDANTGEVVFPAGEKITPRKAKKAESDGLET
LVIPTEEIFGKFAAYDLVNSKTGEIYIEAGDEVSEENLEKLDKAKIKEIELLDIDYVNTG
PWMRNTLQADKAEDTDQALADIYRVMRPGEPPTRETADALFYGLFFDPERYDLSAVGRVK
LNMRLDLDAEDTVTTLRREDILAVVKQLVDLKDGKGEIDDIDNLANRRVRSVGELLENQY
RVGLLRMERAVKERMSSVDVSTVMPNDLINAKPSVAAVREFFGSSQLSQFMDQTNPLSEV
THKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKY
GFIETPYRKVVDNKVTDEVVYLSAMEEQKHTIAQANADLNDDGSFVEEIVSSRQAGEFLM
AQRDQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVQADAPLVGTGM
EETVARDSGAAIAARRAGVIDQVDATRIVIRVTDDVKAGESGVDIYTLQKFQRSNQNTCI
NQRPLVKVGEKIEAGEIIADGPSTQFGELALGRNVLVAFMPWNGYNYEDSILISERIVKD
DVFTSIHIEEFEVAARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILCG
KITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVDVRTFNRHGIDIDDRT
RAIQAEEKERLKKDAHDEKTILNRATYNRLAELLVGQTATAVPKGIKKGAKLDPQMLEGV
ERKLWWKIAVKDDAAQADLEAMKGQYDEAVGRIDAKLDDRVQKLEAGDELPPGVLKMVKV
FVAVKRKLQPGDKMAGRHGNKGVISRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQI
FETHLGWAARGLGQQIGSLLEDIHAKGKDIAKKDLDGVKSHLKGVYGEKYHAEIDGRDEE
RTMELAQNLVYGVPMGTPVFDGARQADVADMLEKAGLDRSGQVTLYDGRTGEAFDRKVTV
GYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTL
QEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGMSVDLNSVADGDD
DDDGDTPAIAAE
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggctacccaatcgaaagacgtgccgaccacccagggtcgctcgctgaagtcgcgccga
attcgcaagattttcggtaacattcacgaagtatcggaaatgccgaaccttatcgaggtt
cagcgcgaatcctacgaggatttcctccgttccgacaagcagcgcgactatgtctcgggt
ctcgagaaaacgctgcgcagcgtcttcccgatccaagatttcgccggcacggcgcatctc
gatttcgacggctatgaactcgaaaagcccaagtacgacaccgaagagtgccgccagcgc
gggctgacctacgctgcgccgatgcgcgtcaccctgcgcctcacctcgttcgagatcgat
cccgacaccgaagccaagtcggtcatcgatatcaaggaacaggatgtctacatgggcgac
atgccgctcatgaccgagaacggcaccttcatcatcaacggcaccgagcgcgtcatcgtc
tcccagatgcaccgttcgcccggcgtgctgttcgaccatgatcgcggcaagacccatgcg
tccggcaagtatcttttcgccgcgcgcgtcattccctatcgcgggtcgtggctcgatttc
gaattcgacgccaaggacatcgtcaacgtccgcatcgaccgcaagcgcaagcttccggtc
acgacgctgctctatgcgctgggcctcaaccacgaggaaatcttcgagcatttctacgat
cgcgtgacgtggaagcgcggcaagcagggttgggaattgcccttccgcagcgaagcgtgg
cgcggcctcaagccgacctacgatctcgtcgatgccaacaccggtgaagtcgtcttcccc
gccggcgagaagatcacgccgcgcaaggccaagaaggccgagagcgacgggctggaaacg
cttgtcattccgaccgaggaaatcttcggcaagttcgccgcctacgacctcgtcaacagc
aagaccggcgagatctacatcgaggcgggcgatgaggtttcggaagaaaacctcgagaag
ctcgacaaggcaaagatcaaggaaatcgaactcctcgacatcgattacgtcaacaccggc
ccctggatgcgcaacacgctgcaggcggacaaggccgaggatacggatcaggcgctggcc
gacatctatcgggtcatgcgtccgggcgaaccgcccacccgcgaaaccgcggacgcgctg
ttctacggcctgttctttgaccccgagcgctacgacctgtcggccgtcggccgcgtgaag
ctcaacatgcgtctcgacctcgatgccgaggatacggtcacgacgctgcgccgcgaagac
attctcgcggtcgtgaagcagctcgtcgacctcaaggacggcaagggcgagatcgacgat
atcgacaacctcgccaaccgccgcgttcggtcggtcggcgaactgctggaaaaccagtat
cgcgtcggccttctgcgcatggagcgcgcggtcaaggagcgcatgagctcggtcgacgtc
tcgaccgtcatgcccaacgatctcatcaacgcgaagccttcggtggccgcggtgcgcgaa
ttcttcggctcctcgcagctgtcgcagttcatggatcagaccaacccgctttccgaagtc
acgcacaagcgtcgtgtctcggcgctcgggccgggcggtctgacgcgcgagcgcgcgggc
ttcgaagttcgcgacgttcacccgacccactacggccgtatctgcccgatcgagacgccc
gaaggcccgaacatcggcctcatcaactcgctcgccagcttcagccgcgtgaacaagtac
ggcttcatcgagacgccgtatcgcaaggtcgtcgacaacaaggtcaccgacgaggtggtc
tatctgtccgcgatggaagagcagaagcacaccatcgcacaggcgaacgccgacttgaac
gacgatggcagcttcgtcgaggaaatcgtctccagccgtcaggcgggcgaattcctgatg
gcgcagcgcgatcagatcacgctgatggacgtcagccccaagcagctcgtgtcggtcgcc
gcctcgcttatcccgttcctcgagaacgatgacgccaaccgcgcgctgatgggttcgaac
atgcagcgtcaggccgtgccgctggtccaggccgacgcgccgctggtcggcaccggcatg
gaagaaaccgtcgcgcgcgacagtggcgccgcgatcgcggcacgccgtgccggcgttatc
gaccaggtcgatgctacgcgtatcgtcatccgcgtcaccgacgacgtgaaggcgggcgag
agcggcgtcgatatctacacgctgcagaagttccagcggtcgaaccagaacacctgcatc
aaccagcgtccgttggtgaaggtgggcgagaagatcgaggcgggcgagatcatcgccgac
ggtccctcgacccagttcggcgaactggcgcttggccgcaacgtgctcgtcgcgttcatg
ccctggaacggctacaactacgaggattcgatcctcatcagcgaacgcatcgtgaaggac
gacgtctttacctcgatccatatcgaggaattcgaagtcgccgctcgcgataccaagctg
gggccggaagacatcacccgcgacattcccaacgtcggcgaggaagcactccgcaacctc
gacgaggcgggcatcgtctacatcggcgccgaagtgcacccgggcgacatcctttgcggc
aagatcacgccgaagggcgaaagcccgatgacgccggaagaaaagcttctccgcgccatc
ttcggtgaaaaggccagcgacgtgcgcgacacctcgctgcgcctgccgccgggcgttgcg
ggcaccgtcgtcgacgtgcgcaccttcaaccgccacggcatcgacatcgacgatcgtacc
cgcgccatccaggccgaggagaaggagcggctgaagaaggacgcgcacgacgagaagacc
attctcaaccgcgcgacctacaaccgtcttgccgaactgctcgtcgggcagacggctacc
gcggtccccaagggcatcaagaagggcgccaagctcgatccgcagatgctcgagggcgtc
gagcgcaagctgtggtggaagatcgccgtgaaggacgatgccgcccaggccgatctcgaa
gccatgaagggccagtatgacgaggcggtcggtcgcatcgacgccaagctcgacgaccgt
gtccagaagctggaagcgggcgacgaactgccgccgggcgtgctcaagatggtcaaagtc
ttcgtcgcggtgaagcgcaagctgcagccgggcgacaagatggccggccgtcacggcaac
aagggtgtcatcagccggatccttccggtcgaggacatgccgttcctcgaggacgggacc
cacgccgacatcgtgctgaacccgctcggcgtgccgtcgcggatgaacgtcgggcaaatc
ttcgaaacgcacctcggctgggccgctcgcggcctcggccagcagatcggcagcctgctc
gaggacatccatgccaagggcaaggacatcgccaagaaggacctcgacggcgtcaagtcg
catctgaagggcgtctacggcgagaagtatcacgccgagatcgacgggcgcgacgaagag
cggacgatggagctggcacagaacctcgtctacggcgtcccgatgggcaccccggtcttc
gacggtgcccgccaggccgatgtcgccgacatgctggagaaagccgggctcgaccgttcg
ggtcaggtcacgctgtatgacggccgcaccggtgaagccttcgaccgcaaggtcaccgtc
ggctacatctacatgctcaagctgcaccacctcgtggacgacaagatccacgcgcgttcg
atcgggccgtacagcctcgtcacgcagcagccgctgggcggcaaggcccagttcggcggc
cagcgcttcggcgaaatggaggtctgggcactccaggcctacggtgccgcctatacgctg
caggaaatgctgacggtgaagtcggacgacgtggtcggccgcaccaaggtctacgaggcg
atcgtcaagggcgacgacacgttcgaggccggtatccccgaaagcttcaacgtgctggtc
aaggaaatgcgctcgctcggcatgagcgtcgatctcaactccgtcgcggacggtgacgac
gatgacgatggcgacacccccgccatcgccgccgagtaa
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