Scophthalmus maximus (turbot): 118292003
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Entry
118292003 CDS
T09850
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04510
Focal adhesion
smau04512
ECM-receptor interaction
smau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118292003 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118292003 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118292003 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
smau00535
]
118292003 (col9a2)
Proteoglycans [BR:
smau00535
]
Extracellular matrix (ECM) proteoglycans
Others
118292003 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118292003
NCBI-ProteinID:
XP_035476509
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Position
22:complement(1506333..1524226)
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AA seq
691 aa
AA seq
DB search
MAALSALLKTWVILQTLCLALAQVRGPPGPQGQPGPPGPSGTPGSDGIDGEKGPPGPPGP
PGQKGEPGEPGPDGVPGENGIDGLIGAKGDRGPVGSPGPKGRPGPSGEPGPPGSGLPGLS
GTPGPIGLPGEIGATGAKGVMGPPGPPGLSGPPGKPGPPGKFIGGEEGSADFQCPLNCPA
GPKGPQGLQGVKGHKGRAGVLGEPGSIGKLGLKGEVGISGEQGIPGPSGPMGLRGYPGMM
GPKGEAGPRGYKGINGPVGIPGPPGEEGPQGPPGEAGDKGDKGSRGIQGPQGAVGKKGEN
GLPGIDGKDGTPGTPGIKGGPGQAGMPGPPGPQGAAGLPGSPGTKGGPGAKGESGPRGHV
GMPGASGPLGEPGVPGEAGMEGVPGPKGDRGQRGPVGPQGVVGKPGSKGERGSIGVPGAQ
GLSGTKGDKGFQGKAGSKGDIGDPGVEGLAGEKGEKGLSGEPGPKGQQGIRGDGGHNGPT
GDPGKPGDQGPPGLPGPRGLNGERGVPGMPGIQGSSGRDASDQHIIEVVLKMLQERLAAV
AVSAKRAVLGGAGVMGPPGPPGPPGAPGSQGPHGLPGARGIPGMIGAHGQIGNTGLKGKR
GAKGDRGDPGKPHPGQPGPPGIQGPPGVDGVARDGRPGERGPQGSAGEAGHPGKAGAPGL
PGFCEAAMCLAASAYTSPRLQEAGRIKGPNV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctctctgccttgctgaagacctgggttatactgcagaccttgtgcctggct
ctggcccaagtgaggggtccacctggacctcagggccagcccggcccaccaggcccgtct
ggcactcctgggtcagatggcattgatggagaaaagggacctcctgggccccctggtcca
ccagggcaaaagggagagccaggagaaccaggtcctgatggagtgccaggagagaatggc
atcgatggtttgatcggcgcaaagggcgatcgaggtccagttgggagccctggccctaag
ggtcgacctggaccaagtggcgagcctggtcctcctggatcaggccttccaggactgtct
ggcactcctgggccaattggacttccaggtgaaatcggagcaactggagcaaagggcgtc
atgggaccacctggacctccaggactttctggacctcctggcaagccgggtcctccaggg
aagttcatcggaggggaggagggcagtgcagacttccagtgtcctcttaactgtccagca
ggaccaaaaggccctcagggactgcagggtgtcaagggacacaaaggacgtgctggtgtt
ctgggagagcctggcagcattggaaaactgggcctcaagggagaagtgggcatctctggg
gaacagggcatcccaggaccttcgggaccgatgggtctgcggggttatccaggaatgatg
ggtcctaaaggagaagcagggcctcgtggttacaagggcatcaacggacctgtaggaatt
cccgggcctcctggtgaggagggacctcagggaccacccggtgaggcaggagacaaggga
gacaaaggcagccgcggtatccagggcccacagggcgcagtcggcaaaaagggagagaat
ggtctgccgggtattgatggaaaagatggcacacctggtactcctggaatcaagggcggc
cctggccaggctggcatgcctggtcctcctggtcctcagggggcagcggggttgcctgga
agtcctgggactaaaggtggacctggagcaaagggtgagtctggacctcgaggtcatgtc
ggcatgcctggtgcctctggacctctgggtgaacctggtgttcctggtgaagccggcatg
gagggagtacctgggcccaagggtgacagaggccagcggggaccggtcgggccacaggga
gtcgtcggcaagcctgggagcaaaggagagagagggtccatcggtgtcccaggggctcag
ggccttagtggaaccaagggagacaagggcttccagggaaaagccgggtcaaagggagac
attggtgaccctggcgttgagggattggccggcgagaaaggtgaaaagggtctgtctggt
gaacccgggcccaaaggacagcaaggaattaggggtgacggcggacacaacggacccacc
ggagaccctggtaagccaggagaccagggaccaccagggcttcctggtcctaggggactc
aatggagagcgaggagtacctggcatgcctggcattcagggatcatctgggcgcgatgca
tcagaccagcatataatcgaggtggtgttgaagatgttgcaggagaggctagcagcggtg
gcggtgagcgccaagagggctgtgctcggtggtgcaggtgtaatgggacctcccgggccc
cctgggcctccgggtgcacctggctctcaggggccacatggcttgcctggcgcccggggc
attcctggcatgattggagcacatggacaaattggaaacacggggcttaaaggaaagagg
ggggcaaagggcgatagaggagatcctggtaaacctcacccaggacaaccaggacctcct
ggaatacaaggtcctcctggtgtggatggtgtggctcgggacggcaggcctggcgagaga
ggaccccagggatcagctggagaggctggtcaccccgggaaggcgggcgcgccgggtctc
ccaggcttctgcgaggcagcgatgtgtctggccgcgtcggcatacacctccccgagacta
caggaggcgggaaggatcaagggacccaatgtttag
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