Scophthalmus maximus (turbot): 118301968
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Entry
118301968 CDS
T09850
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smau04040
]
118301968 (scn1lab)
Ion channels [BR:
smau04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
118301968 (scn1lab)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
Spem1
New_glue
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
118301968
NCBI-ProteinID:
XP_047187894
LinkDB
All DBs
Position
1:30210926..30246024
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AA seq
2022 aa
AA seq
DB search
MAQLLVPPGPDSFLPFVPESLAAIERRIAEEEARRPRAERRSDDDDENGPRPNSDLEAGK
SLPFIYGDTPSHLVSTPLEDLDTYYSNQKTFIVLNRGKTIFRFNATPALYILSPFNPFRR
IAIRVLVHSMFSMLIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRLPIASNATNGSSNATSDDFE
FLNNTLMEINTTFVQNATFNWTEYISDEENYYYLPGRRDALLCGNGSGAGLCPEGFTCVK
AGRNPDYGYTSFDTFSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSFY
LVNLILAVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAAATESGEYS
GRAGPASESSSGTSKLSSKSAKERRNRRKKRRQREEEEERGVRKFHKSESEDSIKRSSFR
FSIDANRLSYEKRCSSPNQSLLSIRGSLLSPRRNSRTSLFSFRGRARDMGSENDFADDEH
STFEESDSRRGSLFLPRRLERRCSAVSQTSLGATRVLLPANGKMHCAVDCNGVVSLVGGT
SVTTSPVGLLLPEGTTTDTDLKKRRSGFHQDYVDEPRGRQRAMSVASILTNTMEELEESR
QKCPPCWYRFANTCLIWDCCPAWLKIKEVVNMVVMDPFVDLTITICIVLNTLFMAMEHYP
MTKEFDTVLSVGNLVFTGIFTAEMCFKVIALDPYYYFQEGWNIFDGIIVSLSLMELGLSK
VEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQL
FGKSYKECVCKISDECELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIV
FMMVMVIGNLVVLNLFLALLLSSFSADNLAATDEDSEMNNLQVAVGRIQRGFAFLKGAVR
QFLRSLCFSGGGKGSGLAEESKPLDELHSNGKGNCISNHTSVEITKEPSRVYMTEGNGRP
GGPLVVGVRPGGDSPVKYPVEECDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSS
DVEGSKEKLDIAEPQHLSSSEGSTVDIRPPGDGVDSVELEPEESMDPEACFTEGCVSRFQ
CCQVNEEGNKYKTWWNLRKTCFIIVEHNWFESFIIFMILLSSGALAFEDIYIEQRRTIKT
MLEFSDKVFTYVFILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANAMGYSEIT
AIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFA
GKYYYCVNTTTDEIFPLHVVNNKTDCLNLVNDSARWKNFKINFDNVGAGYLALLQVATFK
GWMDIMYAAVDSRDVEDQPQYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKK
FGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPTNAFQACVFDCITKQAFDIVIMILIC
LNMVTMMVETDDQTPDMDIILYWINMVFIVLFTGECVLKMISLRHYYFTIGWNIFDFVVV
ILSIVGMFLSEVIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFN
IGLLLFLVMFIYAIFGMSNFAYVKREAGINDMFNFETFGNSMICLFQITTSAGWDSLLAP
ILNKREPDCDSQMEHPGNYYKGNCGNPSVGIFFFVSYIIICFLIVVNMYIAVILENFSVA
TEESAEPLSEDDFEMFYEVWERFDPDATQFMEYSKLSDFADALDPPLRMPKPNMIHLVSM
DLPMVSGERIHCLDILFAFTKRVLGEGGEMDVLRGQMEERFMASNPSKVSYEPITTTLRR
KQEDMSAVIIQRAFRRYMMRLAMKKASTLYKERLKEGIRDPDKDVMVISKFTENSTSEKT
DMTPSTASPPSYNSVTKSDKDKYEKENIEKENKGKDLKEQKK
NT seq
6069 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtaccgcccggacctgacagcttcctccccttcgtccccgagtcg
ctggccgccatcgaaaggcgcatcgccgaggaggaggcccggagaccgcgggcggagcgc
cgcagcgacgacgacgatgagaacgggccgaggcccaacagcgacctggaggcagggaag
tcgctccccttcatctacggggacactccctcccacctggtgtccacccccctggaggac
ctggacacttactacagcaaccagaagaccttcatagtattgaatcgtgggaagactatc
ttccgtttcaacgccactcctgccttgtacatcctgagccccttcaaccccttcaggagg
atagctattagagttttagtgcactcgatgttcagcatgttgatcatgttcaccatcctg
accaactgtgctttcatgaccctcagtaatccgccggagtgggccaagaatgtagagtac
acattcacagggatttacacctttgagtccctgataaagatcctggccagaggcttctgt
gtggggaagttcactttcctccgggacccgtggaactggctggatttcagtgttatcctc
atggcatatgtcacagagtttgtggacctgggcaatgtctcagcactgcgaaccttcagg
gttctgcgagccctgaaaactatatcggtcatcccaggcctgaagaccatcgtcggcgct
ctgatccagtcggtgaagaagctgtcggacgtgatgatcctcaccgtcttctgcctcagc
gtcttcgccctcatcggcctgcagctcttcatgggcaacctgaggcagaagtgcgtgcgt
ctgccgatcgccagcaatgccaccaacggcagcagcaacgcgaccagcgacgactttgag
ttcctcaacaacacgctgatggagatcaacaccacgtttgtgcagaacgccaccttcaac
tggacggagtacatcagcgacgaggagaactactattacctccccggccgcagggatgct
ctgctctgtgggaacggcagcggcgccgggctctgccccgagggcttcacatgtgtcaaa
gcgggtcgtaatccagattacggctacaccagtttcgacaccttcagctgggccttcctc
tccctattccgactcatgacccaggactactgggaaaacctctaccagcagactctgcgg
gctgcggggaagccctacatgatcttcttcgtgctggtgatcttcctgggatccttctac
ttggtcaacctgatcctggccgtggtggccatggcctacgacgagcagaaccaggcgacc
atcgaggaggcccagcagaaggaggaggagttccaggccatgctggagcagctgaagagg
cagcaggaggaggcacaggttgccgcggcagcggcggccacggagagcggggagtacagc
ggcagagcgggccccgcctctgagtcgtcgtcggggacgtcgaagctgagctcgaagagc
gccaaggagcgacgcaacaggcgcaagaagaggaggcagagggaggaggaggaggagagg
ggggtgcgcaagttccacaagtccgagtccgaggacagcatcaagagatccagcttccgc
ttctccatcgacgccaaccggctgtcgtacgagaagagatgctcctcccccaaccagtct
ctcctcagtatccgtggatccctgctctcgcctcgcaggaacagccggaccagcctgttc
agcttccgtggccgcgcgcgcgacatgggctccgagaacgacttcgccgacgacgagcac
agcaccttcgaggagagcgacagtcgccggggctccctgttcctgccgcgccgcctggag
cgccgctgcagcgccgtcagccagacaagcctgggggcgacgcgggtcctgctgcccgcc
aacggcaagatgcactgcgccgtcgactgcaacggcgtggtgtcgttggtcggtggaacg
tctgtaacaacctcgcccgtaggtctcctgctgcccgagggaacaactacggacactgac
ctgaagaagcgccgttcaggcttccaccaggattatgtggatgaacccaggggccggcag
cgagccatgagtgtggccagtatcctcaccaacaccatggaagagctcgaggagtcgaga
cagaagtgccccccctgctggtacagatttgccaacacctgtctgatctgggattgttgt
ccggcgtggctgaaaatcaaggaggtggtcaacatggtggtcatggacccgttcgtggac
ctgaccatcaccatctgcatcgtcctcaacacactcttcatggccatggagcattacccc
atgaccaaagaattcgacaccgtcctctcagtcgggaacctggtgttcacaggcatcttc
acagccgagatgtgcttcaaggtcatagccctggatccctactactacttccaggagggg
tggaacatcttcgacggcatcatcgtcagcctcagtctcatggagcttggcttgtccaaa
gtagaaggcctgtcggtgctcaggtccttcagattgctgagggtcttcaaactggccaag
tcgtggcccactttgaacatgctgatcaagatcatcgggaactcggtgggcgctctgggc
aacttgactctggtcctggccatcatcgtcttcatcttcgccgtggtcggcatgcagctg
ttcggcaagagctacaaggagtgtgtgtgcaagatctccgacgagtgcgagctgccacgc
tggcacatgcacgacttcttccactcgttcctcatcgtgttccgggtgctgtgcggcgaa
tggatcgagaccatgtgggactgcatggaagtggcgggacagagcatgtgcctgatcgtc
ttcatgatggtcatggtcatcggaaaccttgtggttctaaacctgttcctggctctcctc
ctgagctcgttcagcgctgacaacctggcagcgaccgacgaagacagcgagatgaacaac
ttgcaggtggcagtgggccgcatccagcggggcttcgcgtttctcaagggcgcggtgcgg
cagttcctccggagcctgtgcttcagcggcggcggaaagggatctggtctggcggaggag
agcaaacccctggatgagctgcacagcaacggcaaaggcaactgcatctccaaccacacc
tcggtggagatcaccaaagagcccagcagggtgtacatgacggagggcaatgggcggcca
ggggggcccctggtggtcggggtcaggcctggcggggactcaccggtgaagtatcccgta
gaggaatgtgactacatgtcgtttattcataaccccagcctgacagtcacggtgcccatc
gctgtgggcgagtccgacttcgagaacctcaacacggaagatttcagcagcgattcgtcg
gacgtagaaggaagtaaagagaagctcgacatagcagagccccagcatctgagctcatcg
gagggcagcacggttgatattcgccccccgggagacggggttgactcggtggagctcgag
ccagaggagtctatggacccagaggcctgcttcacagagggctgtgtgagcaggttccag
tgctgccaggtcaacgaggagggcaacaaatacaagacctggtggaatctcaggaagacc
tgcttcatcatagtggagcacaactggtttgaatccttcatcatattcatgatcctgctc
agcagtggcgcgctggcgttcgaggacatttacatcgagcagcggcggacgatcaaaacg
atgctggagttctccgacaaggtctttacttacgtcttcattctggagatgctgctgaag
tgggtggcgtacggtttcgtcaagtacttcaccaacgcctggtgctggctggacttcctc
atcgtagacgtgtccctggtcagcctcgtggccaacgccatgggctactctgagatcacc
gctatcaaatctctgaggactctccgagccctgcggcccctgagggccctgtctcggttt
gagggcatgagggttgtggtgaacgcgctgctgggcgccatcccctccatcatgaacgtg
ctgctggtctgcctcatcttctggctcatcttcagcatcatgggcgtcaacctgttcgca
gggaagtactactactgcgtcaacaccaccacggacgagatcttcccgctgcacgtcgtc
aacaacaagacggactgcctgaacttggtgaacgacagcgcccgctggaagaacttcaag
atcaactttgacaacgtcggggccggatatctggctctgttgcaagtggcaacgtttaaa
ggttggatggacatcatgtatgcagccgtcgactctcgagacgtggaggaccagccgcaa
tatgaagtgaacctgtacatgtacctctactttgtcatcttcatcatctttggctccttc
ttcaccctcaacctgttcatcggtgtcatcatcgacaacttcaaccagcagaagaaaaag
tttggaggtcaggacatcttcatgacggaggagcagaagaaatactacaacgccatgaag
aagctcggttccaagaaaccacaaaaacctattcctcggccaactaatgcatttcaagcc
tgcgtgtttgactgcatcacaaagcaggcgttcgacatcgtcatcatgatcctgatctgc
ctcaacatggtgaccatgatggtggagacggacgaccagacgcccgacatggacatcatc
ctctactggatcaacatggtcttcatcgtgctcttcaccggcgagtgtgtgctcaagatg
atctccctgcgtcactattatttcaccattggctggaacatatttgactttgtggtggtg
atcctgtccatcgtaggtatgtttttatctgaagttatcgagaaatactttgtgtcccca
acgctgttccgagtgatccgtctggccaggatcggccgcatcctccgtctcatcaaaggt
gccaagggcatccggacgcttctctttgccttgatgatgtcgcttcctgccctgttcaac
atcggcctccttctctttcttgtcatgttcatctacgccatctttggcatgtccaacttt
gcctacgtgaagcgcgaggcaggaatcaatgacatgttcaatttcgagaccttcgggaac
agtatgatctgtttgtttcagatcaccacctcagccgggtgggacagcctgctggcgccc
atactgaacaagagggagcctgactgtgacagtcagatggagcacccgggcaactactac
aagggcaactgtggcaacccgtcagtgggcatcttcttctttgtcagctacatcattatc
tgcttcctcattgtggtcaacatgtacattgccgtcatcctggaaaacttcagcgtggcc
acggaggagagcgccgagcccctgagcgaagacgactttgagatgttctacgaagtgtgg
gagcgctttgaccccgatgccacgcagttcatggagtacagcaagctttctgactttgca
gatgctctagatccaccgctgcgcatgcccaagcctaacatgatccacctcgtctccatg
gatctgccgatggtaagtggcgagcgcatccattgccttgacatcctgtttgccttcacc
aagcgagtgttgggtgagggcggcgagatggacgtgttacgtgggcagatggaggagcgc
ttcatggcctcgaacccctccaaggtgtcctacgagcccatcaccaccaccctccgccgc
aaacaagaggacatgtcggccgtgattatccagagagccttccgccgctacatgatgcgc
ctggccatgaagaaggcctccaccctctacaaggagcggctgaaggaaggaatccgcgac
cccgacaaggacgtgatggtcatcagcaagttcaccgagaactccacctcggagaaaacg
gacatgaccccgtccacggcgtccccgccctcctacaacagtgtgacgaaatcagacaag
gacaaatacgagaaggagaatattgaaaaggaaaacaaagggaaagacttgaaagaacaa
aagaaataa
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integrated database retrieval system
