Scophthalmus maximus (turbot): 118309035
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Entry
118309035 CDS
T09850
Name
(RefSeq) ATP-dependent RNA helicase DDX19B isoform X1
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03013
Nucleocytoplasmic transport
smau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118309035
03015 mRNA surveillance pathway
118309035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118309035
Enzymes [BR:
smau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118309035
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
118309035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF1028
Motif
Other DBs
NCBI-GeneID:
118309035
NCBI-ProteinID:
XP_035486510
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All DBs
Position
6:16708549..16716470
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AA seq
488 aa
AA seq
DB search
MATDSWAQAVDEQEAAAESIGNLHIKEKPEENGTAAVSTEFTAAAAKSEGEGDNKGTDEG
DKDDKAAQSLLNKLIRNNLVSNTNQVEVLQKDPNSPLYSVKSFEELRLKPQLLQGVYGMG
FNRPSKIQETALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSHVDPNHTYPQCLCVSPT
YELALQTGKVIEQMGKHYPEVKLVYAIRGNKLQRGMKLQEQIVIGTPGTMLDWCGKFKFI
DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKNCQMLLFSATFEETVWNFAQRIVPD
PNIIKLKREEETLDTIKQYFVLCNSKEEKFQALCNIYGAITIAQAMIFCHTRKTAGWLAG
ELSREGHQVAVLSGEMQVEQRAAVIDRFRDGKEKVLVTTNVCARGIDVEQVSVVINFDLP
VDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDSKMSMNILHRIQEHFNKNIEQLDTDDL
DEIEKIAS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggactcctgggcccaggcggtggacgaacaagaagccgcggcggaatcgatc
ggcaaccttcacataaaagagaaaccagaggaaaatggcaccgctgctgtctcgacagaa
ttcaccgctgcagctgcgaaatcggaaggcgaaggagacaacaaggggacggacgagggt
gacaaagatgacaaagcggcacagtcattgttgaacaagctgatccggaacaatcttgtc
agtaatactaaccaagtggaagtccttcagaaggatccaaactctcctctctactccgtc
aagtcctttgaggagttgagactcaaacctcagctgcttcagggcgtgtacggaatgggt
ttcaaccggccgtctaaaatccaggagacggccctacccatgatgctggctgagccaccg
cagaatctgattgcccagtcgcagtccggaacaggtaaaacggctgcttttgtcctggcc
atgctcagccacgtcgaccccaaccacacatatccccagtgcctgtgtgtgtcgcccacc
tatgaactggcacttcagaccggtaaagtgatcgagcagatgggcaagcactatcccgag
gtcaaactcgtctacgccatcagaggaaataaattgcagcgcggcatgaagctacaggaa
cagattgttattggcacacctggcactatgctggactggtgcggtaagttcaagtttatc
gaccccaagaagatcaaggtgtttgtgctggacgaggctgacgtcatgatcgccacacag
ggtcaccaggaccagagcatccgcatccagaggatgctgcctaaaaactgccaaatgttg
ctgttttctgccacatttgaagaaaccgtgtggaactttgcccagcgcatcgtgcccgac
cccaacatcatcaaactgaagagagaggaggagacgctggatactatcaaacagtacttt
gtgttgtgcaacagcaaggaggagaagttccaggccctctgtaacatctacggtgccatt
actattgcccaggccatgatcttctgccatacgaggaagactgcaggctggctggcaggg
gagctgtccagagaaggccaccaggtggcagtgctcagcggagagatgcaggtggagcag
agggctgctgtcatcgatcggtttagagacggcaaggagaaggtcctggttactacaaat
gtttgtgctcgaggcattgatgtggagcaggtttctgtggtaatcaactttgacttgccg
gtggacaaggacggtaacccagacaacgagacttacttgcacaggatcggccgcacgggt
cgatttggcaaaaggggactggcgatcaacatggtggacagcaagatgagcatgaacatc
ctccacaggatccaggagcatttcaataaaaacattgaacaactagacacggacgacctg
gatgaaattgagaaaatcgccagctaa
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