Scophthalmus maximus (turbot): 118311301
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Entry
118311301 CDS
T09850
Name
(RefSeq) collagen alpha-1(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04510
Focal adhesion
smau04512
ECM-receptor interaction
smau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118311301
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118311301
09142 Cell motility
04820 Cytoskeleton in muscle cells
118311301
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
smau00535
]
118311301
Proteoglycans [BR:
smau00535
]
Extracellular matrix (ECM) proteoglycans
Others
118311301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
118311301
NCBI-ProteinID:
XP_035490940
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All DBs
Position
5:3889462..3913206
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AA seq
950 aa
AA seq
DB search
MAPNCSASTRGQQPWRPSMSACSPIFMALLSLLLTPALGQLDLNRLDGDTVCPPMRSGQD
DLPGFDLITQFQLDVIPLKGVRKVDGSTPLQVAYRLDREANFQIPTMLNFPRGFPDEYSF
MVTFRMIKNTVNKVWNVWQIVDEDGNKQAGMRLNGDQQALEYFLMGADGNLQTVVFPGLS
VLFNTKWHKVMIGVERDQVTLYVDCQPVDRKPIKGKGPVNTEGDTLIGRLDADPDASVVF
ELQWMLIHCDPKRAQRESCNELPATEMYANAEPDKSVQGPPGAPGPEGPRGSAGENGRDG
RDGLPGSPGSPGVPGSKGEQGEIGLPGQRGLPGLPGVGGPAGPMGPRGIVGERGLPGFPG
PAGPAGPATEGPAGPPGKPGIPGDEGNIGPEGAPGPRGGAGTPGPPGLPGPPGPVGPPGA
SNEGSGEACPAACPAGPRGMAGLPGMKGHKGLAGEPGKDGTPGEKGEAGAAGAHGPPGHM
GDDGQRGPIGFPGSAGEKGDRGPPGFNGVPGPTGPPGGPGVEGIRGRQGLHGPKGDDGAV
GPQGEQGPSGDKGEVGEPGSDGLDGLPGVDGAKGEAGTPGSVGVRGIVGIPGLPGKQGVV
GPPGEKGDIGAEGPTGPVGVPGKIGEPGNDGEDGKPGDKGATGVTGKQGPLGPTGPPGIQ
GDKGDKGDTGAKGLKGHTGLKGDQGPVGPMGPKGSLGDTGMAGDSGVKGDQGPPGIPGIR
GQLGEKGQRGATGTDGRPGQPGHEGLAGPMGARGMEGEPGLSGAPGPRGLPGPKVSDDKL
REMCSAVVEEQLAEFRKELLQKPAALGAPGTPGPAGPPGPTGPAGAAGAAGAPGLTGPKG
HPGYFGLPGIQGKKGDAGEKGDKGNKGEDGIGVKGSPGAPGAQGAPGAPGIGQDGKNGER
GDAGSPGVPGTSGPRGPSGPPGLCDPSTCISRLPPLYMVSGKKSASYKNP
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atggcccccaactgctccgcttccacaagagggcaacaaccgtggcgtccgtcgatgtcg
gcgtgctcccccatctttatggctctcctctccctcctcctcactccggcactcggacaa
ctcgacctcaaccgactggacggtgacaccgtctgcccaccaatgaggagcggacaagac
gaccttccaggttttgatctgatcactcagttccagctggatgtgatccccctgaaaggt
gtgaggaaggtggacggctccactcccctccaggtggcctaccgcctcgaccgggaggcc
aacttccaaataccaaccatgctgaactttcctcgtggcttcccggacgagtattccttc
atggtgaccttccgcatgataaagaacactgtgaacaaggtgtggaacgtctggcaaata
gtggacgaggatgggaacaaacaagccgggatgaggctgaatggtgaccagcaggctctg
gagtacttcctgatgggcgcagatggcaacctgcagaccgtcgtcttccctggcctctct
gtgctcttcaacaccaagtggcacaaggtgatgatcggcgtggagcgcgaccaggtcacg
ctgtacgtggactgccagcccgtggaccggaagcccatcaagggcaagggccccgtcaac
acagagggagacactctcatcggcaggctggatgctgatcctgacgcctccgtggtgttt
gagctccagtggatgttgatccactgcgacccaaagagagcccagagagagagctgcaat
gagctgcctgccaccgagatgtatgccaatgctgagcccgacaaatcagtccaaggcccc
ccaggagcccctggcccagagggccccagagggtcagcaggagaaaacggcagagatgga
agagacggtcttccggggtctcctggcagtccaggcgttcctggcagcaaaggggagcaa
ggggagatcggtcttcctggacagagaggcctgcctggtcttccaggagttggtggtcct
gctggcccaatgggtcccagagggattgtaggagagagaggtcttccaggcttccctgga
cccgcaggtcctgctggaccagcaactgaaggacctgctggaccaccagggaaaccagga
atcccaggagatgaaggaaacatcgggcctgagggtgcacccggacccagagggggagca
ggcaccccagggcctcctggtcttcctggtccaccagggcctgtgggaccgcctggtgcc
agcaatgagggaagtggggaagcttgtcctgctgcctgccctgctggaccccggggaatg
gctggactgccagggatgaagggtcacaaaggtttggctggtgagcctggaaaagatgga
acgcctggagagaagggagaggctggagcagcaggtgctcacgggccaccaggtcacatg
ggagatgatggtcaaagagggcccattggattcccgggaagcgctggagagaagggagac
agaggtcctcctggtttcaatggtgtcccaggacccaccggcccacctggtggtcctggt
gtggaaggaatccgtggacgccagggtttgcatggacccaagggtgacgatggagctgtg
ggaccgcagggagagcagggaccctcaggggacaaaggagaagttggagagcctggctca
gacggcttggatggactccctggagttgatggcgctaagggcgaggctggaactcctgga
tccgtgggtgtcagggggattgtgggtattccgggcctgccagggaagcagggagtcgtc
ggaccccctggtgaaaagggtgatatcggtgctgagggacccaccgggccagttggagtt
cctggaaagattggtgagcctggaaatgatggagaagatggaaaaccaggagataaagga
gcaactggtgtaacaggaaaacaagggccattggggcctacaggtcctccaggcatccag
ggtgacaagggagataaaggtgacactggtgccaaaggattaaagggtcatactggactc
aaaggtgatcagggacctgtgggacctatgggaccaaaaggaagtctgggggacacaggc
atggcaggagattccggggtgaagggagaccagggccctcctggtattcctggaatcaga
ggacagcttggagagaagggccagagaggagcaacagggactgatggcagaccaggtcag
ccaggccacgagggtttggccggtccaatgggagccagagggatggagggagaaccaggc
ctctctggagcaccaggtcccagaggtttacctggcccaaaagtgagtgacgataagctt
cgagaaatgtgctcagctgttgtagaagaacaattggcagaatttaggaaagagcttctg
cagaagccagcagcccttggtgcccctggtacccctggaccagcaggacctcctggcccc
acaggaccagctggagcagcaggagcagcaggagctccaggcctcacgggtcctaaaggc
cacccaggctactttggacttccaggcatacaaggcaagaaaggtgatgctggggaaaag
ggagacaagggaaacaagggagaggatggcataggggtcaaaggcagcccaggcgcacct
ggtgcacaaggtgctccaggggcccccggcattgggcaagatggcaaaaatggagaacgt
ggtgatgcaggaagtcccggtgtcccaggaacatctggtccaaggggcccctcaggacct
cccggcctttgtgacccatcaacctgtataagccgacttccgcccctctatatggtcagc
ggaaagaaatctgccagctacaaaaacccgtga
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