Scophthalmus maximus (turbot): 118314867
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Entry
118314867 CDS
T09850
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118314867 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118314867 (cnot1)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118314867 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118314867 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
118314867
NCBI-ProteinID:
XP_047189005
LinkDB
All DBs
Position
7:complement(22884309..22903932)
Genome browser
AA seq
2500 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAVDNPLHYQKSLKPSTHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGEEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCTSVDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQIVVYGIQRGLGIEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFC
FADYPCHNVATDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSLSMDPLSG
MGSLNLGGTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLTNPNPSTPFGGIGSLSSQL
PGMDSGPLGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGI
GSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSSL
GMPTVSTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDEANSYFQRIYNHP
PHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGG
IIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKNRLKDYPQYCQHLASIA
HFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLALAQVQAQSQQPGGPKPPQPG
QPSTLVTTTTTTTTAAKTTTITRPTTTSFKKDVPPSINTTNIDTLLVATDQTERIVEPPE
NVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFL
DTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILYT
DLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQNPWTMAIMNVLAELHQEH
DLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLKSLEEQLSAPKKETKPPEELLPVS
TTGDFVPFAAPPSTPSAATTTACTTTGPPTPQFSYHDINVYALAGLAPHININVNIPLLQ
AHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDSEESRMRVAAHHM
MRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDNCELAC
CFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGV
DPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQIYDKCMADLEQHL
HAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKAVEGLLDATSGADADLLLR
YRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYD
LHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFHTIETLMRTCAHSRANAP
EGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLY
HSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAA
SAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQT
EFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELIS
HRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVLL
HDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPR
ILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQMFPFVSQVSNEPGNRYNIQLIN
ALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRY
PNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFK
FWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7503 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatcttgtggacaattta
acaaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggt
cctgaggcagacaggcatctactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcaaagccaaactttatctctactctgtgttacgccgttgacaatcccctgcac
taccagaagagtttgaagccctcgacccacttattcactcaactgagtaaagttcttaag
ctcagcaaggtccaagaggtgatatttggtcttgctttgctcaattccagcaacacagac
ctgcgcggctttgccgctcagttcatcaagcaaaaacttccggatctcctgcggtcatac
gtggacgctgatctcggaggaaaccaggaaggtggcttccaggacattgccatagaggtc
ttgcacctgctgctctcccatctactttttggccagaagggagccagtggggtcggggag
gagcagattgacgccttcctcaagacactttgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctttaccctgaaaaacgggacattctcatggacaggatccta
ccagactcgggggagttggctaagaccatgatggagagttctcttgcagaattcatgcaa
gaagttggctatggcttctgtactagtgtggatgagtgcagaaatataatcctccagtat
ggggtgagggaggtgacggccagccaggtagccagggtcctgggcatgatggcccgaacc
cactctgggctaactgatggcatccccctacagtccatctctgcaccaggcagtggtatc
tggagcgatgggaaggataagaacgatggctcgcaggcacacacgtggaatgtcgaggtt
ctcatcgacgttgtcaaagaagttaatcccaatctgaacttcaaagaggtgacgtacgaa
ctggaccacccaggctttattatccgggacagtaaaggcctgcagatagtggtatacggc
attcagaggggattgggcattgaggtcttccccgtcgatctcatctatcggccgtggaaa
cacgccgagggacagctgtcgttcatccagcactccctgatgagtccagaagtgttctgt
tttgctgactacccctgccacaatgtggccactgacatcctgaaggccccaccagaggat
gacaaccgggagatcgccacatggaaaagtctggacctggtggagagcctgctgcggctg
tctgaggtgggacagtacgagcaggtgaagcagctgttcagcttcccgatcaagcactgc
ccagacatgctggtgttggcattactgcagatctccacctcctggcacacgctgcgccat
gagctcatctctaccctcatgcccatctttctgggcaaccatcccaactctgccattatc
ctgcactacgcctggcatggacagggacagtctccttccatccgtcagctaataatgcat
tcaatggccgagtggtacatgagaggagagcagtatgaccaagccaagctgtcacgcatc
ctggatgtggcccaggacctgaagtctttatcgatgctgctgaatggtactccatttgcc
tttgttatcgacctcgctgcacttgcctctcgccgtgaatacctcaaacttgacaagtgg
ctaactgacaagatcagagagcacggggaaccttttatccaggcgtgtgtgacattcctg
aaaaggcgctgcccatccatcatggggggtctggcccctgacaaggaccagcccaaaagt
gctcagctgccgccagagaccttagccaccatgttggcctgcctgcagtcctgtgctggg
agtgtgtcccaggagttgtcagagacgatccttaccatggttgccaactgcagcaatgtg
atgaataaagctcggcagccgccaccaggggtgatgccgaagggacgtgctcccagcacc
agcagcctggatgccatctcgcctgtgcaggtatctttaagtatggaccctctgtctggt
atgggttctttgaacctggggggcacagccacctcccacactcagagcatgcagggtttc
ccaacctcactgagttcagcttttagtaatcctcagtccccagcaaaggctttcccgcct
ctcaccaaccccaaccccagcacaccatttgggggcattggcagcctgtcctcgcagctc
cccggtatggactctggtcctttgggctctggtatcggctctggtatcggctctggtatc
ggctctggtatcggctctggtatcggctctggtatcgggtcaggcatcgggtcaggcatc
gggtcaggcatcgggtcaggcatcgggtcaggcatcggatcaggcatcggctctggtatc
ggctctggcatcggctctggcatcggctctggcatcggctctggcatcggctctggcatc
ggttcaggcatcggctctggcatcggctctggcatcggctctggcatcggttcaggcatc
ggttccggtatcggctccggcatcggttccggcatcggctccggcatcggctctagtctg
ggtatgccaaccgttagcactgatccctttggcaccagaaagatgagcaccccaggcttg
aacccgccaacctttcagcagactgacctttctcaggtgtggcccgaggcaaaccagcac
tttagcaaggaaattgacgacgaagcaaacagttacttccagcgcatctacaaccatcca
cctcacccaactatgtctgtggatgaagtgcttgagatgctgcagaggttcaaggattca
accatcaagcgggagcgagaggtgttcaactgcatgctccggaacttgttcgaggaatac
cggttcttcccccagtatccggacaaggagctgcacatcaccgcctgcctttttggtgga
attatcgagaagggcctcgttacctacatggccctgggcttggccctccgatacgtcctt
gaagccttaagaaaaccctacgggtccaaaatgtattactttggaatagccgccctagat
aggttcaaaaacagacttaaggactaccctcagtattgtcaacacttggcttcaattgcc
catttcttgcagtttccccaccatttacaagagtgcgtgcagtatatcgagtatggccaa
cagtcacgggaccctccggtgaagatgcagggctccatcaccacacccggcagtctggcc
ctggcacaggttcaagcccagtcgcagcagcccggtggcccgaaacccccacagccaggt
cagcccagcaccctggtcaccaccaccacgaccacaaccaccgcagcaaagaccaccacc
attacacgaccaaccaccaccagcttcaagaaggatgtgcctccctctataaacactacc
aacatcgacaccctgctggtagccaccgaccagacagaaaggattgtagagcctccagag
aatgtccaggagaagattgcttttatcttcaacaacctttctcagtccaacatgacacag
aaggttgaggagttgaaggagacggtgaaggaggagttcatgccctgggtgtcccagtac
ctggtgatgaagcgtgtcagcattgagcccaacttccacagtctgtactccaactttctg
gacactctcaagaacccagagttcgtcaagatggtcctcaatgagacctacaggaatatc
aaggtgctcttgacatcggacaaggcagctgccaatttctctgatcgctccctgctgaag
aatctgggccactggttgggcatgattacactagccaaaaacaagcccatcctctataca
gatctggaggtcaagtctctgctactggaagcatatgtgaaaggccagcaggaattactg
tacgtggttccctttgtggccaaagttttggagtcaagtctgcggagcatggttttcagg
ccccagaacccctggaccatggccatcatgaatgtccttgccgagcttcaccaggaacac
gacctcaagctgaacttgaagtttgagattgaagttctgtgcaagaacttgtccctggac
ataaacgacctgaagcctggaaacctcctgaaggataaagacaagctcaagagtctggag
gaacaactttctgcaccaaagaaagagacaaagcccccagaagagctgctgccggtttct
accacaggagactttgttccatttgcagcccctccctcaaccccatctgctgccaccacc
actgcttgcacaaccactgggcccccgaccccacagttcagttaccatgacatcaacgtg
tatgccttggcaggcctggctccacacataaatataaatgtcaatatccctttgctacaa
gcccatccccagctgaaacagtgtgtgcggcagtcggtggagcgcgccgtccaggagctg
gtgcatcccgtggtggaccgctccatcaaaatcgccatgacgacctgcgagcagatcatc
aggaaggactttgccctggactcggaggagtcacgcatgcgcgtcgccgctcaccacatg
atgagaaacctgactgccggcatggccatgatcacctgccgcgagccgctgctcatgagc
atcgccactaacctgaagaacagctttgctgctgcacttcgggcaccaaccccacaacaa
agggaaatgatggaagaggctgcggccaggatcgctcaggacaactgtgaattagcctgt
tgcttcattcagaaaaccgccgtggagaaggctggccctgaaatggacaagagactagcc
acggagtttgagctgaggaagcacgcacgtcaagagggacgccgctactgtgatcctgtt
gttctgacttaccaagccgagcgtatgcctgagcagatcagactcaaggtgggaggagtg
gacccgaagcaactggctgtatatgaggagtttgcccggaacgttccaggtttcttgccc
agtaacgatctctcacaacccactggcttcctggctcagcccatgaagcaacaggcctgg
gcgacggacgatgtcgctcagatctacgacaagtgcatggccgacttggagcaacatctc
cacgccatccctcctgccctggccatgaaccccttgacccaggccctgcgcagcctgctc
gaggccgtggctttggctcggaactccagggacggcattgccgcactcggcctgctgcag
aaggctgtggaaggtctcctggacgccaccagtggggccgatgccgacttgctgctccgc
tacagagagtgccacctgctggtgctgaaagcgctgcaggatggacgtgcctatgggcca
cagtggtgcaataagcagatcaccaggtgtctgatcgaatgccgtgatgagtacaaatac
aacgtggaggcagtggagcttctgatcaggaaccatctcgtcaatatgcagcagtacgac
ttgcacctggcacagtcaatggaaaatggattgcactacatggccgttgcattcgccatg
cagctggtgaagctgctgcttgtggacgaacgcagcgtcagccacgtcacagaggccgat
ctctttcacaccattgagactttgatgaggacctgtgcacactccagagccaacgcaccc
gagggtctcccccagcttatggatgttgttcgctccaactacgaagccatgatcgaccgg
gcccacggtggacccaactttatgatgcactctgggatttcgcaggcttccgaatacgac
gatcccccaggcctgagggagaaggcggaatacctcttgagggaatgggtgaacctgtat
cactcagctgctgctggcagggacagtaccaaagccttctctgcctttgttggccaaatg
caccagcagggaatcttaaagacagacgacctgatcacaaggttcttccggctctgcaca
gaaatgtgcgtggagatcagctaccgcgcgcaagccgagcagcagcacaacccggcggcc
agcgcggccatcatcagagccaagtgctaccacaacctggacgcctttgtccggctcatc
gcccttctggtcaaacactccggagaggccaccaacactgtgacgaagatcaacctcctc
aacaaggtgctgggtatcgtagtcggggtgttgatccaggaccacgacgtccgtcagacg
gaattccaacagttgccgtaccaccgcattttcatcatgctgctgttggagctcaatgct
ccggaacacgtcctcgagaccatcaacttccagacgctcaccgccttctgcaacaccttc
cacatcctgagacccaccaaagctccaggtttcgtctacgcctggctggaactcatctcc
catcgcatcttcatcgccaggatgctagcacacacaccgcagcagaagggttggcccatg
tacgcacagctgctgatcgacctcttcaagtacctggcccccttcctgaggaatgtagag
ctcaacaaacctatgcaaatcctctacaagggcacactgcgagttctcctggtcctgctg
cacgacttcccagagttcttgtgtgactaccactacggcttctgcgatgtcattccacca
aactgcatccagctccgcaacctcatcctcagtgccttcccacgcaacatgaggctcccc
gaccctttcacacccaatctcaaggtggacatgctgagtgagatcaacatcgctccccgt
atcctcaccaacttcacgggcgtgatgccttcgcagttcaaaaaggacctggactcgtat
ctgaaaacacgttcaccggtcaccttcctctcggagctgcgaagcaacctgcagatgttt
ccgttcgtctcccaggtgtctaatgagccagggaatcgctacaacatccagctgatcaac
gctctggtgctgtacgtgggcacacaggccatcgctcacatccacaacaagggcagcact
ccctccatgagcaccatcacccactcggcacacatggacatcttccagaacctggccgtg
gacctggacactgagggacgttacctgttcttgaacgcgattgccaatcagctgcgctac
cccaacagccacactcactacttcagctgcaccatgctctatctgttcgccgaggcaaac
accgaggccatccaggagcagatcaccagggttctgttggagcggctgatagtgaacagg
cctcacccatggggtctcctcatcaccttcatcgagctgatcaagaatcctgccttcaag
ttctggagccacgactttgtgcactgtgcccctgagattgaaaagctgttccagtcggta
gcccagtgctgcatgggacagaagcaggcccagcaggtgatggaaggcaccggtgccagc
tag
DBGET
integrated database retrieval system
