Scophthalmus maximus (turbot): 118316318
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Entry
118316318 CDS
T09850
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04510
Focal adhesion
smau04512
ECM-receptor interaction
smau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118316318 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118316318 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118316318 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
smau00535
]
118316318 (col9a3)
Proteoglycans [BR:
smau00535
]
Extracellular matrix (ECM) proteoglycans
Others
118316318 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118316318
NCBI-ProteinID:
XP_035499914
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Position
3:complement(2579183..2596748)
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AA seq
678 aa
AA seq
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MAAISAVWLLVLCQLLTSSSAQRPGPRGASGPPGPTGAAGRDGTDGKDGPAGLPGKAGPK
GKDGIPGAAGKPGLPGLPGVDGLTGPDGPAGKDGPPGDAGESGPAGPPGSPGRGRSGAAG
LPGTNGLPGGVGPQGPAGAEGQSGLPGPPGPDGPPGLPGTLHDLSGDLLCPAICPPGPSG
PPGMPGFKGHTGHKGDKGEPGKDGEKGDGGPPGPPGLPGTVGLQGPRGLRGLQGPMGSVG
DRGLPGFRGKHGIVGIIGKTGDAGEKGPQGFRGPKGEIGKIGPKGGPGGAGPKGDPGIPG
RDGKDGMPGLDGEKGDAGRHGVVGEKGPNGLPGLQGKAGAKGSTGEVGDPGKTGETGPSG
EPGIPGDIGVPGERGIAGPRGVAGGIGPAGNIGPQGGKGFQGVRGGLGDPGLPGPTGIRG
EFGERGPVGASGAKGDMGVAGSDGLPGENGEPGHFGPVGQKGESGKRGELGPKGVSGPQG
ELGARGPLGKIGLMGFQGEQGQPGIAGKNGVPGKLSSEQHIRELCGSMIDDQIAQLAANL
RRPLSPGMVGRPGPAGRAGKPGVAGSIGHPGSRGPPGYRGLPGELGDPGTRGDVGEAGDK
GSVGKALDGPTGDQGHQGLPGVAGIVKDGRDGSAGDPGESGESGRAGRTGHQGSPGICDT
SACQGASAAGKSSNPKNH
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgatctccgctgtgtggctgctcgttctgtgccagctgttgacttcatcctct
gcccagaggcctggcccccgaggagcctctgggcccccgggacccacaggagcagcagga
agagacggcactgacggtaaagatggacctgctggacttcctgggaaagccggacccaaa
gggaaagatggaattccgggagcagcaggaaaaccgggcctgccaggacttccaggcgtg
gatggcttgacgggtccggacggtcctgccgggaaggacgggcccccgggcgacgcaggt
gagtctggacctgccggacctccaggttctcctggcagagggagatcaggagctgcagga
cttcctggaaccaacgggctgccgggcggagtcggaccccagggtccagcgggtgctgag
ggtcagtcaggacttcctggacctccgggccccgacgggcctccaggtcttcctggtact
ctccatgacctcagcggcgacctcctgtgtccggccatctgcccccctggtccctccggt
cctcctgggatgccaggcttcaagggtcacacaggacataaaggagacaaaggagagcct
gggaaagatggggagaagggtgacggcggtccacccggtcctccaggtcttcccggcacc
gtgggtctgcagggcccacgtggtctgagaggtttacagggaccgatgggatctgtcgga
gacagaggtctgcccggcttcaggggaaagcacggcatcgtcggcatcattggaaagaca
ggcgacgccggcgaaaagggaccacagggattcagaggacccaaaggagaaattggtaaa
attggtcccaaaggaggtccggggggagcgggacccaaaggggatccgggcatcccgggc
cgggacggcaaagacggaatgccggggctcgacggtgagaagggcgacgctgggcgacac
ggagtcgtcggagagaaaggacccaacggacttcctggtttacaaggaaaagccggagcg
aagggatcgacaggagaagtcggtgatccggggaagaccggggagacgggaccctctgga
gagccaggtattcctggcgacatcggtgtcccaggagagaggggcatcgccgggcccaga
ggagtcgccggaggaatcggacctgcaggcaacatcgggcctcagggagggaaaggcttc
cagggggtgagagggggcctgggggatccgggtctgcctggacccacaggaatccgtgga
gagtttggtgaaaggggtccggtcggagcttctggagccaaaggagacatgggtgtggca
ggaagtgacggtttaccaggagagaacggagaacctggtcactttggaccagttggacag
aaaggagagtccgggaaacgtggagaactgggacccaagggcgtgtccggtcctcagggc
gagctcggagccagggggcctctgggaaaaatagggctgatgggcttccagggggaacag
ggtcagcctggaatcgcaggaaagaacggtgttcctggcaaactgagcagcgagcagcac
atccgagagctgtgcggctccatgatcgatgatcagatcgcgcagctggccgctaacctg
cgaagacccctgtctcccggaatggtgggacgtccgggccccgccggccgtgctggaaaa
ccgggagtcgccggctctatcgggcatccgggaagccgcggaccgccgggctaccgaggc
ctgcccggagagctgggagaccctggtaccagaggtgacgtcggcgaagcaggtgacaag
ggatcggtcggtaaagccctggatgggccgactggagaccaaggacaccaaggtcttcca
ggagtagctggaatagtcaaggacggacgtgatggatctgcaggagatccgggtgagtcc
ggcgagtcgggcagggcgggcaggactggacaccaggggtcccctggaatctgtgacacg
tcggcctgtcagggagcgtcggccgctgggaagtcctccaaccccaagaaccattag
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