Shewanella marisflavi: CFF01_01860
Help
Entry
CFF01_01860 CDS
T05400
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smav
Shewanella marisflavi
Pathway
smav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CFF01_01860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smav03400
]
CFF01_01860
Enzymes [BR:
smav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFF01_01860
DNA repair and recombination proteins [BR:
smav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CFF01_01860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
PriA_C
DEAD
Helicase_C
ResIII
PriA-like_WH
PriA_CRR
AAA_30
TrwB_AAD_bind
DUF5816
AAA_22
AAA_19
zinc-ribbons_6
Motif
Other DBs
NCBI-ProteinID:
ASJ95430
LinkDB
All DBs
Position
complement(403441..405636)
Genome browser
AA seq
731 aa
AA seq
DB search
MSLFVEVALPVPMRQAFSYRVKETDMAKADIGVRVRVPFGRQQLIGLVTGLSSQCDLAPT
QIKSVIAFLDDQAVLPPSLYKLTQWAARYYFCSLGQMLSQALPVALRKGAEVEAQQLKIW
QVSPQGQAADIDTLKRAPAQRKLLHALLETSLSQEEINALDLSKTALKTLAERGWIECIE
KRCETDLSWRDSLELGEAPHQLNPEQAIAVATLNQQQGYTCSLLEGITGSGKTEVYLALL
ETVLKQGKQALILVPEIGLTPQTISRFKRRFKVQVAVIHSGLTDNQRLSAWRQARSGEAA
IIIGTRSALFTPMRYPGIIILDEEHDSSFKQQEGVGYHARDLAVMRGHLEKIPVLLGSAT
PSLETLQNALAGRYQHLSLGKRAGAAEKVRQGIIDIRNQPLKNGLSHALLNEMRIHLDAG
NQVLLFLNRRGFAPALLCHECGHLHECDRCDAFFTVHQSLGEIRCHHCGNQYAIPKQCHQ
CGSTMLMGQGVGTEQLAEALTKEFPNYPVVRIDRDTTSRKGALEGHLNAIHKGEYKILVG
TQMLAKGHHFPDVTLVGLLDVDGALFSADFRAPERFGQLYTQVSGRAGRARKAGTVLLQT
HQCDNPILRELMHKGYGEFARGQLEERKQALLPPAWHMLLLRAEAHRAEDADSFLTQVAA
LLPQNETCEVIGPMPAPMDKKAGKFRRQLMFQTKTRSQLQQAFEQAQPQIEALPLAKKCR
WSLDRDPQDLL
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgtttgtcgaagttgccctgcccgtccccatgcgccaagcctttagctatcgt
gtcaaagagacagatatggccaaagccgatataggtgtcagggtgcgtgtccctttcggt
cggcagcaacttatcggcctggtcaccggactctcgagtcagtgcgacctggcaccgact
cagataaaatctgtcatcgccttcctcgacgaccaagcagtgctgcccccctcgctctac
aagttgacccaatgggccgcgcgttactatttttgtagcctggggcagatgctctcccaa
gcgcttcctgtggcgctgcgcaaaggcgccgaggttgaagcgcagcaactgaagatctgg
caggtgtccccccaaggtcaagccgcggatatagacacgcttaaacgcgcccccgcccag
cgcaaactgctacatgccctacttgaaacgtccctcagccaggaggagatcaatgccctg
gatctgagcaagacggcacttaagacattagccgagcgaggctggatcgagtgtatcgag
aagcgctgcgagaccgaccttagctggcgcgatagccttgaacttggcgaggcgccccac
caactcaatcccgaacaggcgatcgccgtagccaccctgaatcaacaacagggttatact
tgttcgctactggaggggatcactggctcgggcaagaccgaagtctatctggccctgctg
gaaaccgtgctcaaacagggtaaacaggccctcatcttagtgcctgaaattggcctgaca
ccccagacgattagccgcttcaaacgccgcttcaaggtacaggtcgcggtgatccattcg
gggctgacagacaaccaacgcctgagcgcctggcgccaggccagaagcggcgaggcggcc
atcatcataggcacccgctcggcgctatttacccccatgcgctaccccggcatcatcatc
ttagatgaggaacacgacagtagctttaaacagcaggagggcgttggctatcacgcccga
gatctggcggtgatgcgcggccacttggagaagatccctgtgctgctaggcagtgcaaca
ccctcactggaaaccttgcaaaatgccttggcgggccgttatcaacacctgagcctgggc
aagcgggccggggccgccgaaaaggtgcgtcaggggatcatcgatatccgcaaccagccc
ctaaaaaatggcttatctcacgccttactcaacgagatgcgcatccatctggatgcaggc
aatcaggtgctgctgtttctcaatcgccgcggctttgccccggcgctgctctgccacgag
tgcggtcatctgcatgagtgcgatcgctgcgacgccttcttcaccgtgcatcaatccctg
ggcgagatccgctgccaccactgtggcaatcaatacgctatccccaaacagtgccaccaa
tgtggtagcaccatgctgatgggccaaggagtgggtaccgagcagttggctgaggcgctg
accaaggagtttcccaactatcctgtggtgcgcatcgatcgtgacaccaccagccgcaaa
ggggcgctggaaggtcacctcaatgccatccataaaggcgagtacaagatcttggtcggc
acccagatgctggccaaagggcaccatttccccgacgtcaccttagtgggactgctggat
gtggatggcgccttgttcagcgccgattttcgcgcccccgaacgtttcggccagctctat
acccaggtctcaggccgtgccggcagggcgcgtaaggcgggaactgtgctgctacagacc
catcagtgcgacaatccgattttgcgcgagttgatgcataagggctatggcgagtttgcc
cgtggtcagctggaggagcgtaaacaagccctgctgccaccggcctggcatatgttgctg
ctgcgcgccgaggcccaccgggccgaagatgccgacagtttcctgacccaggtcgccgct
ctactgccccaaaacgaaacctgtgaagtgataggcccaatgcccgcccccatggacaag
aaggcgggcaagttcagacgtcagctgatgtttcaaaccaagacccgcagccagttacag
caggcgtttgaacaggctcagccgcagattgaagccctgccgctggccaagaagtgtcgc
tggagtctagatcgcgacccacaggatctgctgtaa
DBGET
integrated database retrieval system